SGN Marker C2_At5g44250

SGN-M8956
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle306549 (SGN)
131676 (CGN)		---
Lycopersicon CombinedSingleSGN-U220838---
Solanum tuberosumSingleSGN-U258418---
ArabidopsisSingleAt5g44250 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27423)
Chromosome
5
Position
17.84 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41811
Forward primer (5'-3')
TCATGGATAGTAAATGGAATTGCTTC
Accessions and product sizes
Solanum lycopersicum TA209
400
Approximate temperature
53°C
Reverse primer (5'-3')
AGATCTTTAAGTCGCTGAGCAAAATTG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11916
Forward primer (5'-3')
TCATGGATAGTAAATGGAATTGCTTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGATCTTTAAGTCGCTGAGCAAAATTG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 280
 Approximate temperature
55°C
  
PCR data   Exp. ID 11917
Forward primer (5'-3')
TCATGGATAGTAAATGGAATTGCTTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGATCTTTAAGTCGCTGAGCAAAATTG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 280
 Approximate temperature
55°C
  
PCR data   Exp. ID 11918
Forward primer (5'-3')
TCATGGATAGTAAATGGAATTGCTTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGATCTTTAAGTCGCTGAGCAAAATTG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 280
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U220838
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Amplicon sequence alignment, FASTA
At5g44250F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Amplicon sequence alignment, FASTA
At5g44250F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At5g44250  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8956 marker 8956
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