SGN Marker C2_At5g46180

SGN-M8971
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle312236 (SGN)
130225 (CGN)
---
Lycopersicon CombinedSingleSGN-U219751---
Solanum tuberosumSingleSGN-U247194---
ArabidopsisSingleAt5g46180 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27438)
Chromosome
5
Position
18.74 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41820
Forward primer (5'-3')
TGGCTTTTTGATTGAACCAATTCAAGG
Accessions and product sizes
Solanum pennellii TA56
550
Solanum lycopersicum TA209
550
Approximate temperature
55°C
Reverse primer (5'-3')
AAATATTGTACTTTGAGCAAAGATCTC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
400
Solanum lycopersicum TA209
200
Mg+2 concentration
1.5mM
   Enzymes
  
Universal primers for Asterid species 
No additional PCR data found.
Genomic location of C2_At5g46180  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8971 marker 8971
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