SGN Marker C2_At5g49820

SGN-M9017
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle304642 (SGN)
120083 (CGN)
---
Lycopersicon CombinedSingleSGN-U241058---
Solanum tuberosumSingleSGN-U247794---
ArabidopsisSingleAt5g49820 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27485)
Chromosome
5
Position
20.27 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41841
Forward primer (5'-3')
TCAAAGACCAAGCCAAGTCTGATG
Accessions and product sizes
Solanum pennellii TA56
850
Solanum lycopersicum TA209
850
Approximate temperature
55°C
Reverse primer (5'-3')
TGTTGCTTCCTGGAGGAAGACTG
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
650
Solanum pennellii TA56
850
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11963
Forward primer (5'-3')
TCAAAGACCAAGCCAAGTCTGATG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGTTGCTTCCTGGAGGAAGACTG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 200
Approximate temperature
55°C
  
PCR data   Exp. ID 11964
Forward primer (5'-3')
TCAAAGACCAAGCCAAGTCTGATG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGTTGCTTCCTGGAGGAAGACTG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 200
Approximate temperature
55°C
  
PCR data   Exp. ID 11965
Forward primer (5'-3')
TCAAAGACCAAGCCAAGTCTGATG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGTTGCTTCCTGGAGGAAGACTG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 200
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At5g49820  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D9017 marker 9017
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