SGN Marker C2_At5g51010

SGN-M9031
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U199018---
Lycopersicon CombinedMultipleSGN-U216110---
Solanum tuberosumSingleSGN-U249021---
ArabidopsisSingleAt5g51010 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27499)
Chromosome
5
Position
20.76 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41847
Forward primer (5'-3')
AGAAGATTCAGGGCGTATGAACC
Accessions and product sizes
Solanum pennellii TA56
900
Solanum lycopersicum TA209
900
Approximate temperature
55°C
Reverse primer (5'-3')
ATAAAGCAGCAAGTGCAACAACTCC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
900
Solanum lycopersicum TA209
850
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11983
Forward primer (5'-3')
AGAAGATTCAGGGCGTATGAACC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATAAAGCAGCAAGTGCAACAACTCC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 230
 Approximate temperature
55°C
  
PCR data   Exp. ID 11984
Forward primer (5'-3')
AGAAGATTCAGGGCGTATGAACC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATAAAGCAGCAAGTGCAACAACTCC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 230
 Approximate temperature
55°C
  
PCR data   Exp. ID 11985
Forward primer (5'-3')
AGAAGATTCAGGGCGTATGAACC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATAAAGCAGCAAGTGCAACAACTCC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 230
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U216110
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At5g51010  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D9031 marker 9031
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