Sol Genomics Network

SGN Marker C2_At5g51840

SGN-M9047
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	303389 (SGN) 122372 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U199579	-	-	-
Lycopersicon Combined	Multiple	SGN-U218639	-	-	-
Solanum tuberosum	Single	SGN-U252616	-	-	-
Arabidopsis	Single	At5g51840 on TAIR	-	-	-

Mapped locations

Map: Tomato-EXPEN 2000
Map version 52 (location: 38887)
Chromosome 11
Position 103.00 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39989

Forward primer (5'-3')

TGGCAAACCTGTCAATGGAGATG

Accessions and product sizes

Solanum pennellii TA56

250

Solanum lycopersicum TA209

250

Approximate temperature

55°C

Reverse primer (5'-3')

TGCTTGTTCTTCCTTCTGCTTAGC

Digested band sizes (using amplicon difference)

Solanum pennellii TA56

100

Solanum lycopersicum TA209

250

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 27517)
Chromosome 5
Position 21.09 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 11998
Forward primer (5'-3') TGGCAAACCTGTCAATGGAGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTTGTTCTTCCTTCTGCTTAGC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 250	Approximate temperature 55°C

PCR data Exp. ID 11999
Forward primer (5'-3') TGGCAAACCTGTCAATGGAGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTTGTTCTTCCTTCTGCTTAGC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 250	Approximate temperature 55°C

PCR data Exp. ID 12000
Forward primer (5'-3') TGGCAAACCTGTCAATGGAGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTTGTTCTTCCTTCTGCTTAGC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 250	Approximate temperature 55°C

PCR data Exp. ID 13922
Forward primer (5'-3') TGGCAAACCTGTCAATGGAGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTTGTTCTTCCTTCTGCTTAGC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 250	Approximate temperature 55°C

PCR data Exp. ID 13923
Forward primer (5'-3') TGGCAAACCTGTCAATGGAGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTTGTTCTTCCTTCTGCTTAGC	Enzymes
Accessions and product sizes Solanum melongena TA2986: 250	Approximate temperature 55°C

PCR data Exp. ID 13924
Forward primer (5'-3') TGGCAAACCTGTCAATGGAGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTTGTTCTTCCTTCTGCTTAGC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 250	Approximate temperature 55°C

PCR data Exp. ID 13925
Forward primer (5'-3') TGGCAAACCTGTCAATGGAGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTTGTTCTTCCTTCTGCTTAGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 250	Approximate temperature 55°C

PCR data Exp. ID 13926
Forward primer (5'-3') TGGCAAACCTGTCAATGGAGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTTGTTCTTCCTTCTGCTTAGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 250	Approximate temperature 55°C

PCR data Exp. ID 13927
Forward primer (5'-3') TGGCAAACCTGTCAATGGAGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTTGTTCTTCCTTCTGCTTAGC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 250	Approximate temperature 55°C

PCR data Exp. ID 13928
Forward primer (5'-3') TGGCAAACCTGTCAATGGAGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTTGTTCTTCCTTCTGCTTAGC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 250	Approximate temperature 55°C

PCR data Exp. ID 13929
Forward primer (5'-3') TGGCAAACCTGTCAATGGAGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTTGTTCTTCCTTCTGCTTAGC	Enzymes
Accessions and product sizes Physalis TA1367: 250	Approximate temperature 55°C

PCR data Exp. ID 13930
Forward primer (5'-3') TGGCAAACCTGTCAATGGAGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTTGTTCTTCCTTCTGCTTAGC	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 250	Approximate temperature 55°C

PCR data Exp. ID 13931
Forward primer (5'-3') TGGCAAACCTGTCAATGGAGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTTGTTCTTCCTTCTGCTTAGC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 250	Approximate temperature 55°C

PCR data Exp. ID 13932
Forward primer (5'-3') TGGCAAACCTGTCAATGGAGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTTGTTCTTCCTTCTGCTTAGC	Enzymes
Accessions and product sizes Coffea canephora BP409: 250	Approximate temperature 55°C

PCR data Exp. ID 33293
Forward primer (5'-3') TGGCAAACCTGTCAATGGAGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTTGTTCTTCCTTCTGCTTAGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 250	Approximate temperature 55°C

PCR data Exp. ID 33294
Forward primer (5'-3') TGGCAAACCTGTCAATGGAGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTTGTTCTTCCTTCTGCTTAGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 250	Approximate temperature 55°C

PCR data Exp. ID 33295
Forward primer (5'-3') TGGCAAACCTGTCAATGGAGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTTGTTCTTCCTTCTGCTTAGC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 250	Approximate temperature 55°C

PCR data Exp. ID 33296
Forward primer (5'-3') TGGCAAACCTGTCAATGGAGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTTGTTCTTCCTTCTGCTTAGC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 250	Approximate temperature 55°C

PCR data Exp. ID 12001
Forward primer (5'-3') TGGCAAACCTGTCAATGGAGATG	Digested band sizes (using AluI) Solanum pennellii LA716: 190 Solanum lycopersicum LA925: 210	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTTGTTCTTCCTTCTGCTTAGC	Enzymes All possible enzymes for pennellii and and lycopersicum: AluI
Accessions and product sizes Solanum pennellii LA716: 250 Solanum lycopersicum LA925: 250	Approximate temperature 55°C