SGN Marker C2_At5g52440

SGN-M9054
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle302739 (SGN)
120989 (CGN)
---
Capsicum annuumSingleSGN-U204370---
Lycopersicon CombinedSingleSGN-U217683---
Solanum tuberosumSingleSGN-U251991---
ArabidopsisSingleAt5g52440 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27524)
Chromosome
5
Position
21.31 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41857
Forward primer (5'-3')
ACTTTGCGCGAATTTCAACCTAC
Accessions and product sizes
Solanum lycopersicum TA209
320
Solanum pennellii TA56
320
Approximate temperature
55°C
Reverse primer (5'-3')
AGGCCAATCTCTCGTTCAAGTGTG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At5g52440  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D9054 marker 9054
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