SGN Marker C2_At5g54080

SGN-M9072
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle301691 (SGN)
120878 (CGN)		---
Capsicum annuumSingleSGN-U197547---
Lycopersicon CombinedMultipleSGN-U217043---
Solanum tuberosumSingleSGN-U257610---
ArabidopsisSingleAt5g54080 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27543)
Chromosome
5
Position
21.96 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41863
Forward primer (5'-3')
TGCTGAGCAGATCTCTGGCACCTC
Accessions and product sizes
Solanum pennellii TA56
1350
Solanum lycopersicum TA209
1350
Approximate temperature
55°C
Reverse primer (5'-3')
AACCGATGGCTTAATACGATATAGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 12014
Forward primer (5'-3')
TGCTGAGCAGATCTCTGGCACCTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AACCGATGGCTTAATACGATATAGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 2000
 Approximate temperature
55°C
  
PCR data   Exp. ID 12015
Forward primer (5'-3')
TGCTGAGCAGATCTCTGGCACCTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AACCGATGGCTTAATACGATATAGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 2000
 Approximate temperature
55°C
  
PCR data   Exp. ID 12016
Forward primer (5'-3')
TGCTGAGCAGATCTCTGGCACCTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AACCGATGGCTTAATACGATATAGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 2000
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U217043
SGN-U284540
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At5g54080  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D9072 marker 9072
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