SGN Marker C2_At5g57900

SGN-M9107
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle300428 (SGN)
121739 (CGN)		---
Lycopersicon CombinedSingleSGN-U222097---
ArabidopsisSingleAt5g57900 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27580)
Chromosome
5
Position
23.47 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41874
Forward primer (5'-3')
TCTCCATTGAAGATCGATGGCG
Accessions and product sizes
Solanum pennellii TA56
280
Solanum lycopersicum TA209
280
Approximate temperature
55°C
Reverse primer (5'-3')
TAAGCAACGGGCAACCAGAAGC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
280
Solanum lycopersicum TA209
200
Mg+2 concentration
1.5mM
   Enzymes
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At5g57900  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D9107 marker 9107
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