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SGN Marker SSR310

SGN-M983

SynonymsNone
Locus associationsNone
SSR info 

Annealing temperatures: Low: 50 High: 50
Repeat motif: TGA   Repeat number: 9
Repeat motif:    Repeat number:
Forward primer: GCGATGAGGATGACATTGAG
Reverse primer: TTTACAGGCTGTCGCTTCCT
Predicted size: 148
Mapped locations  
Map: Sun1642 x LA1589   
Map version
85 (location: 43795)
Chromosome
4
Position
55.60 cM
Confidence
uncalculated
Protocol
SSR


Sun1642 x LA1589

PCR data   Exp. ID 44804
Forward primer (5'-3')
GCGATGAGGATGACATTGAG
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
TTTACAGGCTGTCGCTTCCT
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589   
Map version
79 (location: 43255)
Chromosome
4
Position
53.20 cM
Confidence
uncalculated
Protocol
SSR


Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589

PCR data   Exp. ID 44618
Forward primer (5'-3')
GCGATGAGGATGACATTGAG
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
TTTACAGGCTGTCGCTTCCT
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPIMP 2008   
Map version
55 (location: 40791)
Chromosome
4
Position
48.00 cM
Confidence
uncalculated
Protocol
SSR


Tomato-EXPIMP 2008

Map: Tomato-EXPEN 2000   
Map version
52 (location: 39217)
Chromosome
4
Position
58.00 cM
Confidence
I
Protocol
SSR


Tomato-EXPEN 2000
Other PCR data 
PCR data   Exp. ID 14103
Forward primer (5'-3')
GCGATGAGGATGACATTGAG
 
 
Mg+2 concentration
Unknown
Reverse primer (5'-3')
TTTACAGGCTGTCGCTTCCT
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 148+146
Solanum lycopersicum LA925: 148+149
 Approximate temperature
55°C
  
PCR data   Exp. ID 62
Forward primer (5'-3')
GCGATGAGGATGACATTGAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTTACAGGCTGTCGCTTCCT
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 149+139
Solanum lycopersicum LA925: 149+149
 Approximate temperature
60°C
  
Genomic location of SSR310  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D983 marker 983
User comments 
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