EST details — SGN-E202054

Search information 
Request: 202054Match: SGN-E202054
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C14204Clone name: cLEC-7-D12
cartOrder Clone
Library Name: cLECOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: combined undifferentiated and shooting callus
Development Stage: 7-10 days post germination

Microarray: Alias clone SGN-C172881 is on microarray TOM1: SGN-S1-1-2.3.20.11
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C172881 [TUS-14-K23] Trace: SGN-T195139 EST: SGN-E393813 Direction: 5' Facility: INRA
Clone: SGN-C172881 [TUS-14-K23] Trace: SGN-T195758 EST: SGN-E394432 Direction: 3' Facility: INRA
Clone: SGN-C172881 [TUS-14-K23] Trace: SGN-T195758 EST: SGN-E398972 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E202054Length: 552 bp (992 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E202054 [] (trimmed) CAGACTTCTCGAACTTACTGGAACCATTAGAAAAGGACATGGTCAGCCTCAGTACTTAGATAAATTGCAGGTAGAGAGGGAACGGGGAATAACCG
TTAAAGCCCAAACAGCAACTATGTTCCATCGTCACAAGTTCCTTGGCAGTGACACAGATTTTTTGTTAAACCTTATTGACACACCTGGGCATGTG
GATTTCAGCTATGAAGTATCCAGATCTTTGGCAGCTTGTCAAGGTGCCCTTTTGGTTGTAGATGCAGCCCAAGGTGTGCAGGCACAGACTGTTGC
TAATTTTTACCTCGCGTTTGAATCAAACCTGGCCATAATTCCTGTCATAAATAAAATTGATCAGCCCACTGCTGATCCAGATCGGGTAAAAACAC
AGCTCAAATCTATGTTTGACCTTAATCCAAGCGATGTACTATTGACATCAGCAAAAACGGGTCTAGGTCTAGAGCATGTTCTTCCTGCTGCAATA
GAGAGAATTCCTCCACCCCCTGGTAAAAACACTTCACCTTTGCGAATGCTTTTGCTGGATTCATATTATGATGAGTA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E202054] SGN-U586459 Tomato 200607 Build 2 18 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T25336 [Download] [View] Facility Assigned ID: TCABB18TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.983 Expected Error Rate: 0.0062 Quality Trim Threshold: 14.5