Notice: The SGN server will be upgraded later today. SGN may be intermittently unavailable during the upgrade. We apologize for any inconvenience.

EST details — SGN-E227030

Search information 
Request: 227030Match: SGN-E227030
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C17623Clone name: cLED-1-J4
cartOrder Clone
Library Name: cLEDOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: ovary
Development Stage: 5 days pre-anthesis to 5 days post-anthesis

Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C17623 [cLED-1-J4] Trace: SGN-T48543 EST: SGN-E227031 Direction: 3' Facility: TIGR
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E227030Length: 548 bp (794 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E227030 [] (trimmed) GAGTTTCCGCAGGATCCCATTTGGCGGAAAGCATATCATGAATTTTTTCATACTCAAGATTCAAACACAAACTCGAGATCTCTGGTTAAAACAGA
AACAATTCCGTCCACTGCAATGCTGAATTCAACAGTGGAGATTTTTGAGCAACGTTTTATGACTGGTGCGGGCAAAAACCTTCCTGAACATGCAA
TGATTTGCATGATAAATCGTGAAGAGGTAAAGCTCTAACTTGGAGTACCGACTTTCCTCACTATTTAATGTTGTTTTGTCCGATAGTTGAGAACG
ATTTGGAAAGTCACCCGATAATTTATTAGTTAATATATTTTCAAGAAATAATATAACCTTAAACACATAATTTAATATTTCCCATTAGTTTACTA
AGTTAAAACATTCTTTAAGTATGCAGTCTTAAATTTTACTTCCAATTCATTTTCTTATTTCTTCCTCTCAGTCAGTCATGAGCGAGCTGTGCTTA
GACGCCCCTGCCGTGGATGATCCGGACAAGTTATTCGCTAATACATTGTTTGAGGTTGTATTCAATGAGAGCC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E227030] SGN-U581383 Tomato 200607 Build 2 11 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T48542 [Download] [View] Facility Assigned ID: TOVAD50TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.962 Expected Error Rate: 0.0095 Quality Trim Threshold: 14.5