EST details — SGN-E246190
Search information |
Request: 246190 | Match: SGN-E246190 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C26598 | Clone name: cLEF-40-P9 |
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Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C176367 is on microarray TOM1: SGN-S1-1-4.1.11.19
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C176367 [TUS-23-M5] | Trace: SGN-T181007 | EST: SGN-E369433 | Direction: 3' | Facility: INRA |
Clone: SGN-C176367 [TUS-23-M5] | Trace: SGN-T181008 | EST: SGN-E369434 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E246190 | Length: 483 bp (868 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E246190 [] (trimmed)
GAATGGTAGAGAAAGGTGAAAAACCTACAGTTATATCCTATGGAGCGTTGCTCAGTGCTCTAGAAAAAGGCAAGCTCTATGATGAAGCTCTTCAG
GTTTGGAAACATATGATCAAAGTGGGGATCGAGCCAAATTTGTATGCCTATACTATTATGGCATCAATTTACACTGCTCAAGGGAAATTTAACAT
AGTTGATTCTATCATCAAGGAGATGGTTACTACTGGAGTTGAGCCTACAGTTGTTACATTCAACGCTATTATTAGTGGATGTGCTCGGAATGGTA
TGGAAAGTGTTGCATACGAGTGGTTTCAGCGTATGAAAACTCAAAACATAACCCCGAATGAGGTAAGCTATGAAGTGCTAATTGAGGCTCTTGCC
AATGATGGCAAGCCGAGGCTAGCATATGAGTTGTATGTGAGAGCTCTAACTGAAGGCCTGAGTCTTTCTACAAAGGCTTATGATGCAGTCATCTC
ATCTACAC
GTTTGGAAACATATGATCAAAGTGGGGATCGAGCCAAATTTGTATGCCTATACTATTATGGCATCAATTTACACTGCTCAAGGGAAATTTAACAT
AGTTGATTCTATCATCAAGGAGATGGTTACTACTGGAGTTGAGCCTACAGTTGTTACATTCAACGCTATTATTAGTGGATGTGCTCGGAATGGTA
TGGAAAGTGTTGCATACGAGTGGTTTCAGCGTATGAAAACTCAAAACATAACCCCGAATGAGGTAAGCTATGAAGTGCTAATTGAGGCTCTTGCC
AATGATGGCAAGCCGAGGCTAGCATATGAGTTGTATGTGAGAGCTCTAACTGAAGGCCTGAGTCTTTCTACAAAGGCTTATGATGCAGTCATCTC
ATCTACAC
Unigenes |
Current Unigene builds | |||||
[SGN-E246190] | SGN-U575916 | Tomato 200607 | Build 2 | 5 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T60042 [Download] [View] | Facility Assigned ID: TMGGC89TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.969 | Expected Error Rate: 0.0141 | Quality Trim Threshold: 14.5 |