EST details — SGN-E246544
Search information |
Request: 246544 | Match: SGN-E246544 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C27822 | Clone name: cLEF-45-K16 |
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Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C176760 is on microarray TOM1: SGN-S1-1-3.1.9.17
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C176760 [TUS-24-M14] | Trace: SGN-T193349 | EST: SGN-E392023 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E246544 | Length: 542 bp (877 bp untrimmed) |
Status: Current Version | Direction: 5' |
>SGN-E246544 [] (trimmed)
GCATATCTCGAGGTGTCTCTGTTACTACTGGAAGACTATGAGCCTCCAACACTTGCTTGTGCACTCAATGAAGTTCTGGCTTTGTTAGTAGGAGA
TGGGTTGTCAAATATGCCCACAATTGTAGCCCCTTTTGTTGTGGCTGCATCTAAGCTTAAGATGGAAAATAGAACTTCTGTTTCAATTGACAATA
GATCAGTTTATGGGTTGCAAGTAGGTGCCTCTAGTGACCTTACTAAAGCTTTGTGCACAAATTTGCAAAGCCCTCCCCCATCGTTGCAGATTTGT
AACGAACAGTTGGCCTGCCTACTTCAATTGGTTCGAGTCCTGAAGATGCCTACTTATGTTATAATTGGCAAAAAAGGTCAAAATTTGCATCGTAA
GACTTCGGAAGAGGAACACGAGGTGATACATGAGATAGGACAGCATTTGGCTAGCTTCTCATCTCTTAGTTTTTCAGGAGAAAAGATAGCCTGGG
ATGCAACAAAGTCTTCGAAAGAAACTCAAGAGCCTTGGCGTGCATTATATGGTTGAATCTTAATGCT
TGGGTTGTCAAATATGCCCACAATTGTAGCCCCTTTTGTTGTGGCTGCATCTAAGCTTAAGATGGAAAATAGAACTTCTGTTTCAATTGACAATA
GATCAGTTTATGGGTTGCAAGTAGGTGCCTCTAGTGACCTTACTAAAGCTTTGTGCACAAATTTGCAAAGCCCTCCCCCATCGTTGCAGATTTGT
AACGAACAGTTGGCCTGCCTACTTCAATTGGTTCGAGTCCTGAAGATGCCTACTTATGTTATAATTGGCAAAAAAGGTCAAAATTTGCATCGTAA
GACTTCGGAAGAGGAACACGAGGTGATACATGAGATAGGACAGCATTTGGCTAGCTTCTCATCTCTTAGTTTTTCAGGAGAAAAGATAGCCTGGG
ATGCAACAAAGTCTTCGAAAGAAACTCAAGAGCCTTGGCGTGCATTATATGGTTGAATCTTAATGCT
Unigenes |
Current Unigene builds | |||||
[SGN-E246544] | SGN-U571922 | Tomato 200607 | Build 2 | 18 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T61279 [Download] [View] | Facility Assigned ID: TMGGV68TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.974 | Expected Error Rate: 0.0048 | Quality Trim Threshold: 14.5 |