EST details — SGN-E247218
Search information |
Request: 247218 | Match: SGN-E247218 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C28127 | Clone name: cLEF-46-K14 |
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Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C176898 is on microarray TOM1: SGN-S1-1-1.3.8.1
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C176898 [TUS-25-C8] | Trace: SGN-T181803 | EST: SGN-E369311 | Direction: 3' | Facility: INRA |
Clone: SGN-C176898 [TUS-25-C8] | Trace: SGN-T181804 | EST: SGN-E369312 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E247218 | Length: 653 bp (1014 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E247218 [] (trimmed)
AAATTCTGATGAATTTCACCAAATTTACTCAGATTCATCATTAGCATTATCCAGATCATCTTCTTGCCTTTACTCACAGCCAAGTTTACCATCAA
TTCCTTCTTTAACTCCACTTTCAACTCATTCAGAACTTTTATCAAACACCTTCTGTGCATCCACTTTTACTGGCCTTTCCTCCTCCGTTTTCTGC
CTATCACTCGCCGGAAAACATCTCTACACCGGAACTTCCAACGGCGAAATCCTTCTACGGAACCAAGAGAAAAATCACTCCGTAGTAGTAGCTCA
AAAACAGAGTAAGAGCTCTGTTAAATCTATAGTTATTTTTGGGGATAAACTCTTCACTGCTCACCAAGATCATAAAATTCGTGTATGGAAAATCG
ACAACCACGATCATAATCAAAGTAATTACAAATGCATTGCTACTCTACCGACGCTGAATGATCGGTGTATGAGATTATTCAGCGCGAAAAACTAC
GTTGAAATTCGTAGACATAAGAAATGTACATGGGTTCATCATGTTGATACAGTTTCAGCTCTAGCTATATCATCTGATAATACTCTGCTTTACTC
TGCTTCATGGGATAGAACTTTCAAAATCTGGAGAATTTTGGATTTCAAATGCCTTGAATCAGTCTGGAATGCTCATGACGATG
TTCCTTCTTTAACTCCACTTTCAACTCATTCAGAACTTTTATCAAACACCTTCTGTGCATCCACTTTTACTGGCCTTTCCTCCTCCGTTTTCTGC
CTATCACTCGCCGGAAAACATCTCTACACCGGAACTTCCAACGGCGAAATCCTTCTACGGAACCAAGAGAAAAATCACTCCGTAGTAGTAGCTCA
AAAACAGAGTAAGAGCTCTGTTAAATCTATAGTTATTTTTGGGGATAAACTCTTCACTGCTCACCAAGATCATAAAATTCGTGTATGGAAAATCG
ACAACCACGATCATAATCAAAGTAATTACAAATGCATTGCTACTCTACCGACGCTGAATGATCGGTGTATGAGATTATTCAGCGCGAAAAACTAC
GTTGAAATTCGTAGACATAAGAAATGTACATGGGTTCATCATGTTGATACAGTTTCAGCTCTAGCTATATCATCTGATAATACTCTGCTTTACTC
TGCTTCATGGGATAGAACTTTCAAAATCTGGAGAATTTTGGATTTCAAATGCCTTGAATCAGTCTGGAATGCTCATGACGATG
Unigenes |
Current Unigene builds | |||||
[SGN-E247218] | SGN-U583051 | Tomato 200607 | Build 2 | 10 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T61629 [Download] [View] | Facility Assigned ID: TMGGZ67TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.961 | Expected Error Rate: 0.0049 | Quality Trim Threshold: 14.5 |