EST details — SGN-E270490
Search information |
Request: 270490 | Match: SGN-E270490 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C67609 | Clone name: cLEN-1-A21 |
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Library Name: cLEN | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: red ripe to over-ripe
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C67609 [cLEN-1-A21] | Trace: SGN-T87794 | EST: SGN-E270489 | Direction: 5' | Facility: TIGR |
Sequence |
Sequence Id: SGN-E270490 | Length: 434 bp (815 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E270490 [] (trimmed)
AACAGAAAAAGTACGATTTACGTGTTTTAAGAAAACATAAATTACAAAGCTTTTTAGCCTGTCTTGGATGAACCTAGGCCCCTCAAAAGATAAAC
CAAATGACTCTTAACTGTGTCTTTTGCCACCGTCTGTCGAGCACCCAGTTCTGGGAAAGGATACCTGACATACAGGGCAGAAAACAAGAACCCAA
CAACAACCTAAAAGACTGAACATGAGCCGGAAGAGTAAAGTTTTGCAAGTTTTCATAACACACTTTATTATAGTAGATACTGATATCTCTGGTAA
CTCCAAAGTTGAACTGCACTATTCATTTTTTCTTTTGAGCAGCCTTGGTGACCTTGGCTCCAAATGGGTCCTTCTTGTCAACATTTTTGATAACA
CCAACAGCAACAGTTTGACGCATGTCCCTCACAACAAAACGTCCCAATGGTGGG
CAAATGACTCTTAACTGTGTCTTTTGCCACCGTCTGTCGAGCACCCAGTTCTGGGAAAGGATACCTGACATACAGGGCAGAAAACAAGAACCCAA
CAACAACCTAAAAGACTGAACATGAGCCGGAAGAGTAAAGTTTTGCAAGTTTTCATAACACACTTTATTATAGTAGATACTGATATCTCTGGTAA
CTCCAAAGTTGAACTGCACTATTCATTTTTTCTTTTGAGCAGCCTTGGTGACCTTGGCTCCAAATGGGTCCTTCTTGTCAACATTTTTGATAACA
CCAACAGCAACAGTTTGACGCATGTCCCTCACAACAAAACGTCCCAATGGTGGG
Unigenes |
Current Unigene builds | |||||
[SGN-E270490] | SGN-U580191 | Tomato 200607 | Build 2 | 66 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T87795 [Download] [View] | Facility Assigned ID: TRRAA11TV |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.930 | Expected Error Rate: 0.0197 | Quality Trim Threshold: 14.5 |