EST details — SGN-E280336
Search information |
Request: 280336 | Match: SGN-E280336 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C72356 | Clone name: cLER-1-O5 |
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Library Name: cLER | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4 weeks
Microarray: Alias clone SGN-C178676 is on microarray TOM1: SGN-S1-1-7.1.4.20
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C72356 [cLER-1-O5] | Trace: SGN-T91889 | EST: SGN-E280335 | Direction: 5' | Facility: TIGR |
Clone: SGN-C178676 [TUS-29-M10] | Trace: SGN-T184012 | EST: SGN-E371683 | Direction: 3' | Facility: INRA |
Clone: SGN-C178676 [TUS-29-M10] | Trace: SGN-T184013 | EST: SGN-E371684 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E280336 | Length: 452 bp (823 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E280336 [] (trimmed)
ATCAATCTTCCACACATCTTTCTTGTCAACTAAGGAACAGTACAAGAATCAACTGTTTTGCATTTTCCTTTAGTAGCAAACACTTGAAGTTATAC
TATTTATTTGTATACCTTCAATCAAGCAGGTGCAATAGAAACTTTTTCAACTTCAACAACATACTCAAGAGTAGCAGAGGGAGGAATTTGCAGCC
CTGTTCCTAAATCTGCTCCTTTTTCTCCAAATCCCAAATTTGGAGGAATTATCACTCTTCTTTTTCCACCTGCCTTCATACTTTATAGTACTGAC
TGTATACCTTAACAAATTCCTTTACTATAAGGGGTTGATCCCATATACTAATGCCAATGGCCTTTTCTTCATTCCATCACCACCAAATGTATCCA
CAAAAACTGCTCCACTGGCTTGTATGCTTCCCTTCACATCTATCACAACTAAGTCCCCTGGCCTTGCTGTTG
TATTTATTTGTATACCTTCAATCAAGCAGGTGCAATAGAAACTTTTTCAACTTCAACAACATACTCAAGAGTAGCAGAGGGAGGAATTTGCAGCC
CTGTTCCTAAATCTGCTCCTTTTTCTCCAAATCCCAAATTTGGAGGAATTATCACTCTTCTTTTTCCACCTGCCTTCATACTTTATAGTACTGAC
TGTATACCTTAACAAATTCCTTTACTATAAGGGGTTGATCCCATATACTAATGCCAATGGCCTTTTCTTCATTCCATCACCACCAAATGTATCCA
CAAAAACTGCTCCACTGGCTTGTATGCTTCCCTTCACATCTATCACAACTAAGTCCCCTGGCCTTGCTGTTG
Unigenes |
Current Unigene builds | |||||
[SGN-E280336] | SGN-U577137 | Tomato 200607 | Build 2 | 19 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T91890 [Download] [View] | Facility Assigned ID: TPRAA87TV |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.922 | Expected Error Rate: 0.0309 | Quality Trim Threshold: 12.5 |