EST details — SGN-E283097
Search information |
Request: 283097 | Match: SGN-E283097 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C71239 | Clone name: cLER-17-E5 |
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Library Name: cLER | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4 weeks
Microarray: Alias clone SGN-C178861 is on microarray TOM1: SGN-S1-1-6.1.3.17
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C178861 [TUS-30-E3] | Trace: SGN-T184339 | EST: SGN-E371725 | Direction: 3' | Facility: INRA |
Clone: SGN-C178861 [TUS-30-E3] | Trace: SGN-T184340 | EST: SGN-E371726 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E283097 | Length: 381 bp (618 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E283097 [] (trimmed)
ACCCAAAGAGATATCTGATTGAAAATATATTTTTTCAATTGATTGAGAGATTCATAATGTGTATTTGTATTTTTGGGATTCAATAATCAACAAAA
ACTGTTTTTGGGTGTAATCAAATATCTTATGTTTGATAAACCGCCAAGAAAATATTGTCTCGCGAACATTTAAGCTGATGTAGAGGTAGTGTAAG
AGCAATCTCTTGTTGTAATGGTATTTGATGAATGTGTGAGTGGTTGGCTTTCGTTTGTATCTTCATACTTGTCTCTTAACCCTTGAAAGCCGAAA
CGATCATAATCATCATAGAATCTTGATTCCATTGTAAACTCAGGGAGGTCAAGATGATTTTCAAGAATTTTGACTACAGCAGACATGGTTGGCCT
A
ACTGTTTTTGGGTGTAATCAAATATCTTATGTTTGATAAACCGCCAAGAAAATATTGTCTCGCGAACATTTAAGCTGATGTAGAGGTAGTGTAAG
AGCAATCTCTTGTTGTAATGGTATTTGATGAATGTGTGAGTGGTTGGCTTTCGTTTGTATCTTCATACTTGTCTCTTAACCCTTGAAAGCCGAAA
CGATCATAATCATCATAGAATCTTGATTCCATTGTAAACTCAGGGAGGTCAAGATGATTTTCAAGAATTTTGACTACAGCAGACATGGTTGGCCT
A
Unigenes |
Current Unigene builds | |||||
[SGN-E283097] | SGN-U574242 | Tomato 200607 | Build 2 | 6 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T95948 [Download] [View] | Facility Assigned ID: TPRCM27TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.932 | Expected Error Rate: 0.0118 | Quality Trim Threshold: 14.5 |