EST details — SGN-E298268
| Search information |
| Request: 298268 | Match: SGN-E298268 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C89642 | Clone name: cLEW-18-M6 |
| ||
| Library Name: cLEW | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: mixed roots grown under different nutrient and mineral difficiencies
Development Stage: 4-8 weeks
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C191679 [TUS-63-K5] | Trace: SGN-T343239 | EST: SGN-E542364 | Direction: 3' | Facility: INRA (MWG) |
| Clone: SGN-C191679 [TUS-63-K5] | Trace: SGN-T349577 | EST: SGN-E548702 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E298268 | Length: 559 bp (979 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E298268 [] (trimmed)
GGTACTTTCACACATAGCTTTTTCCTTGTACCAAAATTGGAAAATCTCAAATTGGGGGCCAATGATCTTCTCAAAGGAGTTTTACCAAAGATCCA
CCCGAGCAACACTACTCTATTGGAGTTGGATATTTCTAACACAAGAATCTCTGGTGAGCTGACTGATTCAATTGGCACCTTCAGTTCCTTGAATA
TCTTGAACCTCAAAGGATGTCGATTCTCTGGTTCCATTCCTGATTCCATTGGCAATCTTACACAAATTAGGTATTTGGATTTCAGTTATAATCAT
TTCACCGGCCATATTCCTTCCACAATCTCTCAATTGAAGCACCTCACATATCTAAGTCTTTCATCCAACTCCTTTTCAGGTGAACTTCCCGATAT
TTTTTCTAACCTCCAAGAGTTACGTTATTTATATCTTTCTAACAACAGCTTCATCGGTTCGTTTCCTTCTAAAATTGTAAGCTTGACACATCTTG
AATGCTTAGACTTGTCCTACAACTTAATGAATGGGACCATACCATCTTCGGTGTTTAGCCTCCCTTTGTTAGGTCTGTTGTGGC
CCCGAGCAACACTACTCTATTGGAGTTGGATATTTCTAACACAAGAATCTCTGGTGAGCTGACTGATTCAATTGGCACCTTCAGTTCCTTGAATA
TCTTGAACCTCAAAGGATGTCGATTCTCTGGTTCCATTCCTGATTCCATTGGCAATCTTACACAAATTAGGTATTTGGATTTCAGTTATAATCAT
TTCACCGGCCATATTCCTTCCACAATCTCTCAATTGAAGCACCTCACATATCTAAGTCTTTCATCCAACTCCTTTTCAGGTGAACTTCCCGATAT
TTTTTCTAACCTCCAAGAGTTACGTTATTTATATCTTTCTAACAACAGCTTCATCGGTTCGTTTCCTTCTAAAATTGTAAGCTTGACACATCTTG
AATGCTTAGACTTGTCCTACAACTTAATGAATGGGACCATACCATCTTCGGTGTTTAGCCTCCCTTTGTTAGGTCTGTTGTGGC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E298268] | SGN-U574729 | Tomato 200607 | Build 2 | 3 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T113448 [Download] [View] | Facility Assigned ID: TRDCR75TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.955 | Expected Error Rate: 0.0074 | Quality Trim Threshold: 14.5 |
Working
