EST details — SGN-E299719
Search information |
Request: 299719 | Match: SGN-E299719 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C90156 | Clone name: cLEW-1-O12 |
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Library Name: cLEW | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: mixed roots grown under different nutrient and mineral difficiencies
Development Stage: 4-8 weeks
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C191355 [TUS-62-M17] | Trace: SGN-T342683 | EST: SGN-E541808 | Direction: 3' | Facility: INRA (MWG) |
Clone: SGN-C191355 [TUS-62-M17] | Trace: SGN-T342685 | EST: SGN-E541810 | Direction: 5' | Facility: INRA (MWG) |
Sequence |
Sequence Id: SGN-E299719 | Length: 321 bp (907 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E299719 [] (trimmed)
GCTTATTTTTTTTTACTTTGCTTAAATGCTTTTTTACTAATCAAATACTTACATATTAAAGTTGGAGGATAGATTATCAATTACTACAATTTATT
TACCATTCACGAAACTTTGCTTGAGATTAAAACAGATTGATTAACACATACGGTTGCACACAATATATGCTGATCAATCAAACCTTTAGATCATT
GGGAGACCCGACCCGACATTCCATCACCTTCGGATCCCTGCATTTCTTCGATAACTGGACCTCCGTAACCCGGAACAACTTCTGAATTCCTAACT
GCATAGGAATTCGTTCCTTCGAGAACAACTCTTAAT
TACCATTCACGAAACTTTGCTTGAGATTAAAACAGATTGATTAACACATACGGTTGCACACAATATATGCTGATCAATCAAACCTTTAGATCATT
GGGAGACCCGACCCGACATTCCATCACCTTCGGATCCCTGCATTTCTTCGATAACTGGACCTCCGTAACCCGGAACAACTTCTGAATTCCTAACT
GCATAGGAATTCGTTCCTTCGAGAACAACTCTTAAT
Unigenes |
Current Unigene builds | |||||
[SGN-E299719] | SGN-U585430 | Tomato 200607 | Build 2 | 19 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T111949 [Download] [View] | Facility Assigned ID: TRDAB90THB |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.942 | Expected Error Rate: 0.0267 | Quality Trim Threshold: 14.5 |