EST details — SGN-E300039

Search information 
Request: 300039Match: SGN-E300039
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C89176Clone name: cLEW-11-P6
cartOrder Clone
Library Name: cLEWOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: mixed roots grown under different nutrient and mineral difficiencies
Development Stage: 4-8 weeks

Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C191580 [TUS-63-G2] Trace: SGN-T343069 EST: SGN-E542194 Direction: 3' Facility: INRA (MWG)
Clone: SGN-C191580 [TUS-63-G2] Trace: SGN-T349549 EST: SGN-E548674 Direction: 5' Facility: INRA (MWG)
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Sequence 
Sequence Id: SGN-E300039Length: 488 bp (830 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E300039 [] (trimmed) GGCAATTTGAACGATATATCTGTATCATCAAAGCCTCAAAGTGTGGATACAGGAAAGAGTGACAGTGCAGCATCAAGCTCAAAGAATAAGCCTGA
GAAAATTGTGCAGCCTCCTCAAACAGAAGACAACTTCAACCAGCTAAATCTTGCAATTGTTGGCCATGTGGATTCTGGAAAGTCAACACTATCAG
GAAGGTTGCTGCACCTATTGGGGCGGATATCCCATAAAGAAATGCACAAATATGAAAAAGAGGCTAAGCAGCAAGGAAAAGGTTCATTTGCTTAT
GCCTGGGCATTGGATGAGAGTGCTGAAGAAAGAGAGAGGGGAATAACTATGACAGTGGGTGTTGCCTACTTTAACACAAAATGTTACCGTGTTGT
TCTGCTTGATTCCCCAGGCCACAGGGACTTTGTCCCAAATATGATATCATGGGCTACACAAGCAGATGCAGCAGTTCTTGTAATTGATGCTTTAG
TTGGTGCGTTTGA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E300039] SGN-U571048 Tomato 200607 Build 2 2 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T112879 [Download] [View] Facility Assigned ID: TRDBR87TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.965 Expected Error Rate: 0.0181 Quality Trim Threshold: 14.5