EST details — SGN-E301388
| Search information |
| Request: 301388 | Match: SGN-E301388 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C90874 | Clone name: cLEW-24-J12 |
| ||
| Library Name: cLEW | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: mixed roots grown under different nutrient and mineral difficiencies
Development Stage: 4-8 weeks
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C191920 [TUS-64-E6] | Trace: SGN-T343659 | EST: SGN-E542784 | Direction: 3' | Facility: INRA (MWG) |
| Clone: SGN-C191920 [TUS-64-E6] | Trace: SGN-T343660 | EST: SGN-E542785 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E301388 | Length: 448 bp (853 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E301388 [] (trimmed)
GCCGTTTTCAACAATATCTCAGAATCAACACTGCCCATCCTAACCCAAACTACACTGCCGCCATTAACTACCTCACTAACTTCGCCAACTCCATC
CCTAATCTCCACTCCAAAATCATTCACCTTACCCCTACTTCGCCTCTCCTCCTATTAACCTGGCCAGGTTCAAACCCTTCACTCCCCTCCATTCT
TTTCAATTCCCATCTTGATTCTGTCCCTGCTGAACCACATAAATGGACCCACCCGCCGTTTTCCGCTCACAAGACTTCCGATGGAAGAATATTTG
CACGGGGAGCGCAGGATGATAAGTGTATTGGTATGCAGTATTTGGAAGCAATCAAAGCGATTCAAATGAGTGATTCAAAATTTGTGCCACTGAGA
AATGTTCATATTCTGTATGTGCCTGAAGAGGAGGTTGGTGGGTTTGATGGGATGGGGAAGTTTGTGGA
CCTAATCTCCACTCCAAAATCATTCACCTTACCCCTACTTCGCCTCTCCTCCTATTAACCTGGCCAGGTTCAAACCCTTCACTCCCCTCCATTCT
TTTCAATTCCCATCTTGATTCTGTCCCTGCTGAACCACATAAATGGACCCACCCGCCGTTTTCCGCTCACAAGACTTCCGATGGAAGAATATTTG
CACGGGGAGCGCAGGATGATAAGTGTATTGGTATGCAGTATTTGGAAGCAATCAAAGCGATTCAAATGAGTGATTCAAAATTTGTGCCACTGAGA
AATGTTCATATTCTGTATGTGCCTGAAGAGGAGGTTGGTGGGTTTGATGGGATGGGGAAGTTTGTGGA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E301388] | SGN-U582789 | Tomato 200607 | Build 2 | 9 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T114511 [Download] [View] | Facility Assigned ID: TRDDR54TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.974 | Expected Error Rate: 0.0070 | Quality Trim Threshold: 14.5 |
Working
