EST details — SGN-E312473
Search information |
Request: 312473 | Match: SGN-E312473 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C100015 | Clone name: cLEZ-20-B9 |
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Library Name: cLEZ | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: root
Development Stage: germinating seedlings
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C193618 [TUS-68-K24] | Trace: SGN-T346576 | EST: SGN-E545701 | Direction: 5' | Facility: INRA (MWG) |
Sequence |
Sequence Id: SGN-E312473 | Length: 488 bp (870 bp untrimmed) |
Status: Current Version | Direction: 5' |
>SGN-E312473 [] (trimmed)
GAAGACAAGCTAAGCCATATTCATCATTTCCTTATAAGCCACAAAAGATAATATGGGTATTTTTCTCCAACTATGGCTTCAAAAAGAATTGCTAT
AATTTGCATGGCTTTTGTCCCAATTATCATTGCCATGATTTCAGTACAAGTAGCCATGGCTCAATCTGATTGTACAAATACACTTATTACTATGG
CTTCATGCCTTAGCTTTGTCACCGGAAGTGCGAAAACGCCATCGGCTTCTTGCTGCTCCGCCCTCTCCGGGGTGTTGCAGTCTAAGCCACGGTGC
CTTTGCGTCATTGTCAACGGTGGCGGTTCATCGTTAGGAGTCCAAATTAATCAAACTCAAGCACTTGCATTGCCTAATGCATGCAATTTACAAAC
TCCACCCGTTAGTAAATGTTACGAGGGTGCACCTACAGAAAGAGCTCCAGATTCTTCGACTGGTATAGCTGTCTCAGGCTCAAAAGCATCAAGAA
GCAACATCATGTC
AATTTGCATGGCTTTTGTCCCAATTATCATTGCCATGATTTCAGTACAAGTAGCCATGGCTCAATCTGATTGTACAAATACACTTATTACTATGG
CTTCATGCCTTAGCTTTGTCACCGGAAGTGCGAAAACGCCATCGGCTTCTTGCTGCTCCGCCCTCTCCGGGGTGTTGCAGTCTAAGCCACGGTGC
CTTTGCGTCATTGTCAACGGTGGCGGTTCATCGTTAGGAGTCCAAATTAATCAAACTCAAGCACTTGCATTGCCTAATGCATGCAATTTACAAAC
TCCACCCGTTAGTAAATGTTACGAGGGTGCACCTACAGAAAGAGCTCCAGATTCTTCGACTGGTATAGCTGTCTCAGGCTCAAAAGCATCAAGAA
GCAACATCATGTC
Unigenes |
Current Unigene builds | |||||
[SGN-E312473] | SGN-U566148 | Tomato 200607 | Build 2 | 2 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T123941 [Download] [View] | Facility Assigned ID: TRZDA05TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.978 | Expected Error Rate: 0.0247 | Quality Trim Threshold: 14.5 |