EST details — SGN-E372679
Search information |
Request: 372679 | Match: SGN-E372679 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C179359 | Clone name: TUS-31-I21 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C179359 is on microarray TOM1 spot ID 1-1-4.1.2.17 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C77440 [cLES-20-P12] | Trace: SGN-T102317 | EST: SGN-E290638 | Direction: 5' | Facility: TIGR |
Clone: SGN-C179359 [TUS-31-I21] | Trace: SGN-T185135 | EST: SGN-E372678 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E372679 | Length: 528 bp (874 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E372679 [] (trimmed)
TGAGATTATACCCAGCACTCACCCTTATGCGAAGCACCTCAAAGGACACTAAATTGGGAGAAATGACAATTCCTGCAGGAGTACAAATTTTTGTG
CCTATATACATAGCACATCGCGACCCCCAAGTATGGGGAGACGATGCACTGATTTTCAATCCAAATAGGTTCTCAGAAGGGGTATCCAAAGCTGC
AAAAGAGCCATTGTATTTCCCCTTCGGTTGGGGTCCTCGAATGTGCATTGGTAATAACTTTGGAATGGCAGAAGCAAAGCTCGTTTTATCTCAAA
TTCTGCAGAGGTTTTGGTTCAAGCTCTCTCCTTCCTATGTTCATGCCCCTCAGGCAATACTCGTTATGAAGCCTCAGTATGGTGCTCAGATAATC
CTCAACAAGCTCTGATGGTTTACTTAATTATCACAACTACTAGTACTAGTTCAATAAATGAGGTTCATATGTATTCTGCATTTCAATACCATGTT
ATTTTTGTATGTGTGACAAACTCTCATTAGCACTATTAAATAATTGTCATCAT
CCTATATACATAGCACATCGCGACCCCCAAGTATGGGGAGACGATGCACTGATTTTCAATCCAAATAGGTTCTCAGAAGGGGTATCCAAAGCTGC
AAAAGAGCCATTGTATTTCCCCTTCGGTTGGGGTCCTCGAATGTGCATTGGTAATAACTTTGGAATGGCAGAAGCAAAGCTCGTTTTATCTCAAA
TTCTGCAGAGGTTTTGGTTCAAGCTCTCTCCTTCCTATGTTCATGCCCCTCAGGCAATACTCGTTATGAAGCCTCAGTATGGTGCTCAGATAATC
CTCAACAAGCTCTGATGGTTTACTTAATTATCACAACTACTAGTACTAGTTCAATAAATGAGGTTCATATGTATTCTGCATTTCAATACCATGTT
ATTTTTGTATGTGTGACAAACTCTCATTAGCACTATTAAATAATTGTCATCAT
Unigenes |
Current Unigene builds | |||||
[SGN-E372679] | SGN-U578058 | Tomato 200607 | Build 2 | 108 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T185136 [Download][View] | Facility Assigned ID: FA0AAD19AE11RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.973 | Expected Error Rate: 0.0079 | Quality Trim Threshold: 12.5 |