EST details — SGN-E372890
Search information |
Request: 372890 | Match: SGN-E372890 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C179605 | Clone name: TUS-32-D3 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C179605 is on microarray TOM1 spot ID 1-1-6.4.1.10 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C80028 [cLET-11-A23] | Trace: SGN-T105251 | EST: SGN-E292788 | Direction: 5' | Facility: TIGR |
Clone: SGN-C179605 [TUS-32-D3] | Trace: SGN-T186042 | EST: SGN-E372889 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E372890 | Length: 709 bp (904 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E372890 [] (trimmed)
CCGAGATGGATTACAGATAATAAAAGATTGTTACAGCTTGATTTGTCCAATAATCATCTCCAAGGTTTGATTCCAGTTGAGATTTGCAATTTGAA
GTTTCTTAATGTCTTAGCTATATCCGAAAACAGGCTTTCAGGATTTATACCTTCTTGTGTGAGTTCTTTACCTCTCAAACACATCCATTTGGAGA
AAAATCAATTGGGTGGTGAATTGGGACATGTACTTTTCAACTTCTCTTCACTGATAACTTTGGACCTTCGCCGCAACAATTTTGCAGGAAATATC
TCACACGCCATAGGCTCACTTACTAATCTCAACTACCTTCTCCTTAGCCATAACCAATTGGAAGGGCAGATTCCAACTCAGATATGTATGCTGAA
CGACTTATCTATCATAGATTTATCTTTCAATATGCTTTATGGTCCTCTCCCTCCTTGTTTGGGTTACTTAACACGGACCAAAAAGGATGCAGAGA
TAAGTTGGACTTATTATCCTGCGACTTCCACGCGTTCATGGTTAAGTTTTGAGATCTGGATGCGTTCGAAAAGGCATTATCACGATAGTCATGGA
CTTCCAAGTGACTTGTTTTTGATGGATGTGGAAACTCANGTCCAGTTTTCAACAAAAAGAAACTCATACACTTACAAGGGAAGCATTCTTAAATA
TATGTCGGGTATTGATCTCTCAAGTAATAGATTGACAGGTGAAA
GTTTCTTAATGTCTTAGCTATATCCGAAAACAGGCTTTCAGGATTTATACCTTCTTGTGTGAGTTCTTTACCTCTCAAACACATCCATTTGGAGA
AAAATCAATTGGGTGGTGAATTGGGACATGTACTTTTCAACTTCTCTTCACTGATAACTTTGGACCTTCGCCGCAACAATTTTGCAGGAAATATC
TCACACGCCATAGGCTCACTTACTAATCTCAACTACCTTCTCCTTAGCCATAACCAATTGGAAGGGCAGATTCCAACTCAGATATGTATGCTGAA
CGACTTATCTATCATAGATTTATCTTTCAATATGCTTTATGGTCCTCTCCCTCCTTGTTTGGGTTACTTAACACGGACCAAAAAGGATGCAGAGA
TAAGTTGGACTTATTATCCTGCGACTTCCACGCGTTCATGGTTAAGTTTTGAGATCTGGATGCGTTCGAAAAGGCATTATCACGATAGTCATGGA
CTTCCAAGTGACTTGTTTTTGATGGATGTGGAAACTCANGTCCAGTTTTCAACAAAAAGAAACTCATACACTTACAAGGGAAGCATTCTTAAATA
TATGTCGGGTATTGATCTCTCAAGTAATAGATTGACAGGTGAAA
Unigenes |
Current Unigene builds | |||||
[SGN-E372890] | SGN-U572573 | Tomato 200607 | Build 2 | 7 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T186043 [Download][View] | Facility Assigned ID: FA0AAD20CB02RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.976 | Expected Error Rate: 0.0084 | Quality Trim Threshold: 14.5 |