EST details — SGN-E374489
Search information |
Request: 374489 | Match: SGN-E374489 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C181914 | Clone name: TUS-38-D8 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C181914 is on microarray TOM1 spot ID 1-1-1.4.10.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C82595 [cLET-20-J12] | Trace: SGN-T107622 | EST: SGN-E295208 | Direction: 5' | Facility: TIGR |
Clone: SGN-C181914 [TUS-38-D8] | Trace: SGN-T187760 | EST: SGN-E374490 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E374489 | Length: 422 bp (906 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E374489 [] (trimmed)
AATATTTAATCAAGTCACACTTATTTATTCCATTATGTATTGTAAGAGTACATGCATGGGTACATTATAATTAATGAACAGACATGAACCCTAAT
TATTTTTTGACATGTGGCTACTTAATTACTTCATTAATTAACCAATCACAGGCATTGATACAGCAACATCCAAGATGTTTACAGCAATACGAACT
CGAAAACACTTAAAATCAGCTGTGCCTGGAGAACCAATCAATCCTATCCGAACATCAGTTATGAATGGATTTTCCTTTTCAATTATTCCCTTAGC
ATATTGTGCTGGTACACCAATAAGTTCTGGCCACATTCGTTTTCCTTTGCACATCAAGTTAGATTCATATTCCTTTAGAAGTTCGATGACTTCTG
GTCCACCAATTTCTTTTCGTGCCATGAGAGTCTCAAAGGAAG
TATTTTTTGACATGTGGCTACTTAATTACTTCATTAATTAACCAATCACAGGCATTGATACAGCAACATCCAAGATGTTTACAGCAATACGAACT
CGAAAACACTTAAAATCAGCTGTGCCTGGAGAACCAATCAATCCTATCCGAACATCAGTTATGAATGGATTTTCCTTTTCAATTATTCCCTTAGC
ATATTGTGCTGGTACACCAATAAGTTCTGGCCACATTCGTTTTCCTTTGCACATCAAGTTAGATTCATATTCCTTTAGAAGTTCGATGACTTCTG
GTCCACCAATTTCTTTTCGTGCCATGAGAGTCTCAAAGGAAG
Unigenes |
Current Unigene builds | |||||
[SGN-E374489] | SGN-U581582 | Tomato 200607 | Build 2 | 35 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T187759 [Download][View] | Facility Assigned ID: FA0AAD26DB04FM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.936 | Expected Error Rate: 0.0001 | Quality Trim Threshold: 12.5 |