EST details — SGN-E375004
Search information |
Request: 375004 | Match: SGN-E375004 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C181225 | Clone name: TUS-36-G15 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C181225 is on microarray TOM1 spot ID 1-1-2.3.15.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C23439 [cLED-5-G19] | Trace: SGN-T49755 | EST: SGN-E231139 | Direction: 5' | Facility: TIGR |
Clone: SGN-C181225 [TUS-36-G15] | Trace: SGN-T187561 | EST: SGN-E375003 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E375004 | Length: 575 bp (864 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E375004 [] (trimmed)
CAGATGGCATTGGCGTCAAATTCTTCTAAATCTAACATTGAGGCCAAAATTTTTCATCATGCAGGTAGAGTTCTAACATGTATTGCTAGAGAGGT
ATTTCTTTCCTTAGGAAGGTATTTTGTGCCAGTCCAGCATGTAAGATGGCATTTATGCTTGGTGCTTTGATTGGGATAGTCTTTATTTTTTTTCA
GGATGGAAAGAGTCCTTCTCAGCTATTGTTGGAGGAGATGAAGTGAAAGCTGGAAAGCCGTCTCCGGAAATATTTCTTGAAGCAGCTAAAAGACT
CAACATGGATCCATCCAGCTTTCTTGTCATTGAAGATTCAATATTTGCAACTAGAAAAGTGGGGACTACCTGCATTTCAAGATAGGATAGAAGGT
ACTTTGCCTTTAGAACCTTGGTATATAGGTGGTCCTGTCATTAAGGGATTTGGGCGCGGCTCAAAGGTTCTCGGGATCCCCACAGCTAATTTATC
CCCACAAGGTTATTCAGCCATTCTTTCAGAACATCCAGCGGGTTGTATATTTTGGATGGGCAGGACTATCAGGTCGAGGTGTCTACAAGATGGTC
ATGAG
ATTTCTTTCCTTAGGAAGGTATTTTGTGCCAGTCCAGCATGTAAGATGGCATTTATGCTTGGTGCTTTGATTGGGATAGTCTTTATTTTTTTTCA
GGATGGAAAGAGTCCTTCTCAGCTATTGTTGGAGGAGATGAAGTGAAAGCTGGAAAGCCGTCTCCGGAAATATTTCTTGAAGCAGCTAAAAGACT
CAACATGGATCCATCCAGCTTTCTTGTCATTGAAGATTCAATATTTGCAACTAGAAAAGTGGGGACTACCTGCATTTCAAGATAGGATAGAAGGT
ACTTTGCCTTTAGAACCTTGGTATATAGGTGGTCCTGTCATTAAGGGATTTGGGCGCGGCTCAAAGGTTCTCGGGATCCCCACAGCTAATTTATC
CCCACAAGGTTATTCAGCCATTCTTTCAGAACATCCAGCGGGTTGTATATTTTGGATGGGCAGGACTATCAGGTCGAGGTGTCTACAAGATGGTC
ATGAG
Unigenes |
Current Unigene builds | |||||
[SGN-E375004] | SGN-U572848 | Tomato 200607 | Build 2 | 12 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T187562 [Download][View] | Facility Assigned ID: FA0AAD24AD08RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.962 | Expected Error Rate: 0.0066 | Quality Trim Threshold: 14.5 |