EST details — SGN-E378277
Search information |
Request: 378277 | Match: SGN-E378277 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C177843 | Clone name: TUS-27-J17 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C177843 is on microarray TOM1 spot ID 1-1-8.2.6.17 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C64114 [cLEM-5-C24] | Trace: SGN-T85021 | EST: SGN-E271216 | Direction: 5' | Facility: TIGR |
Clone: SGN-C177843 [TUS-27-J17] | Trace: SGN-T183091 | EST: SGN-E370854 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E378277 | Length: 933 bp (1305 bp untrimmed) |
Status: Current Version | Direction: 5' |
>SGN-E378277 [] (trimmed)
GCTGGATCATTTAGTTCAGAGGACCGATATTGACACATCAAGAATAGTAGTCTTTGGAAGGTCACTTGGAGGAGCTGTTGGCACTGTTCTTACCA
AAAACAATCCTGACAAGGTAGCTGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGCAGGAGTTCTCTTGCCATTCTTGAAGTGG
GTCATTGGTGGCAGTGGCTCAAAGGGTTTCAAGCTTCTTAACTTTGTTGTTCGATCTCCATGGAATACCATTGATGTCATTGGTGAGATCAGGCA
ACCAATCCTCTTCCTATCTGGATTACAAGATGAGATGGTTCCACCATTCCACATGCAGATGCTGTATGCAAAGGCAGCGGCACGTAACAGGCAAT
GCTTATTTGTGGAATTTCCTAGTGGGATGCACATGGATACCTGGTTGGCAGGTGGTGATCATTATTGGAGGACAATTCAGAAATATTTGGAAGAA
ACTGTCCCAGAGAAGAAGGATGATGAATCAAAGAAGGATTCCGAACTGTCCTCTAAGCAAAATGTATCTTCAGATTTCGCTGCAAGCTGAAATGT
TGAGTTTCAGGCAGTTCAAATGTAACTTTGGATTCGAGGATTCAAATACATTTCTTTTGATGTTGCAGTGATGAAGAGCAGTTTGTGATATCAAG
GGAATGGAAGTGCATCCTTTCAAATATTTATTCTTCTGATGATATTTTTTGGTGTCCTATTTTCAGAAGGTAAAAAGATGTGAAGGGTCTTGATT
TATACTGCATCTCACTAACAATACTAGGGTGTCGAAATATAGGTCCAGCTGAGTTGTTTTGTATGAATAAGGATCCAAACGTAAAATGGCAACTC
TCTACTAGAGAGTGATAACAGGCGGAAGACATTCTTTCGTGTGAATGGCTTACTCTTTATTTGGTGTGATGCTTTTTC
AAAACAATCCTGACAAGGTAGCTGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGCAGGAGTTCTCTTGCCATTCTTGAAGTGG
GTCATTGGTGGCAGTGGCTCAAAGGGTTTCAAGCTTCTTAACTTTGTTGTTCGATCTCCATGGAATACCATTGATGTCATTGGTGAGATCAGGCA
ACCAATCCTCTTCCTATCTGGATTACAAGATGAGATGGTTCCACCATTCCACATGCAGATGCTGTATGCAAAGGCAGCGGCACGTAACAGGCAAT
GCTTATTTGTGGAATTTCCTAGTGGGATGCACATGGATACCTGGTTGGCAGGTGGTGATCATTATTGGAGGACAATTCAGAAATATTTGGAAGAA
ACTGTCCCAGAGAAGAAGGATGATGAATCAAAGAAGGATTCCGAACTGTCCTCTAAGCAAAATGTATCTTCAGATTTCGCTGCAAGCTGAAATGT
TGAGTTTCAGGCAGTTCAAATGTAACTTTGGATTCGAGGATTCAAATACATTTCTTTTGATGTTGCAGTGATGAAGAGCAGTTTGTGATATCAAG
GGAATGGAAGTGCATCCTTTCAAATATTTATTCTTCTGATGATATTTTTTGGTGTCCTATTTTCAGAAGGTAAAAAGATGTGAAGGGTCTTGATT
TATACTGCATCTCACTAACAATACTAGGGTGTCGAAATATAGGTCCAGCTGAGTTGTTTTGTATGAATAAGGATCCAAACGTAAAATGGCAACTC
TCTACTAGAGAGTGATAACAGGCGGAAGACATTCTTTCGTGTGAATGGCTTACTCTTTATTTGGTGTGATGCTTTTTC
Unigenes |
Current Unigene builds | |||||
[SGN-E378277] | SGN-U572689 | Tomato 200607 | Build 2 | 15 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T1471 [Download] [View] | Facility Assigned ID: TUS27J17.ab1 |
Submitter: Koni | Sequencing Facility: Giov. Lab |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.975 | Expected Error Rate: 0.0107 | Quality Trim Threshold: 14.5 |