EST details — SGN-E378277
| Search information |
| Request: 378277 | Match: SGN-E378277 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C177843 | Clone name: TUS-27-J17 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C177843 is on microarray TOM1 spot ID 1-1-8.2.6.17 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C64114 [cLEM-5-C24] | Trace: SGN-T85021 | EST: SGN-E271216 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C177843 [TUS-27-J17] | Trace: SGN-T183091 | EST: SGN-E370854 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378277 | Length: 933 bp (1305 bp untrimmed) |
| Status: Current Version | Direction: 5' |
>SGN-E378277 [] (trimmed)
GCTGGATCATTTAGTTCAGAGGACCGATATTGACACATCAAGAATAGTAGTCTTTGGAAGGTCACTTGGAGGAGCTGTTGGCACTGTTCTTACCA
AAAACAATCCTGACAAGGTAGCTGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGCAGGAGTTCTCTTGCCATTCTTGAAGTGG
GTCATTGGTGGCAGTGGCTCAAAGGGTTTCAAGCTTCTTAACTTTGTTGTTCGATCTCCATGGAATACCATTGATGTCATTGGTGAGATCAGGCA
ACCAATCCTCTTCCTATCTGGATTACAAGATGAGATGGTTCCACCATTCCACATGCAGATGCTGTATGCAAAGGCAGCGGCACGTAACAGGCAAT
GCTTATTTGTGGAATTTCCTAGTGGGATGCACATGGATACCTGGTTGGCAGGTGGTGATCATTATTGGAGGACAATTCAGAAATATTTGGAAGAA
ACTGTCCCAGAGAAGAAGGATGATGAATCAAAGAAGGATTCCGAACTGTCCTCTAAGCAAAATGTATCTTCAGATTTCGCTGCAAGCTGAAATGT
TGAGTTTCAGGCAGTTCAAATGTAACTTTGGATTCGAGGATTCAAATACATTTCTTTTGATGTTGCAGTGATGAAGAGCAGTTTGTGATATCAAG
GGAATGGAAGTGCATCCTTTCAAATATTTATTCTTCTGATGATATTTTTTGGTGTCCTATTTTCAGAAGGTAAAAAGATGTGAAGGGTCTTGATT
TATACTGCATCTCACTAACAATACTAGGGTGTCGAAATATAGGTCCAGCTGAGTTGTTTTGTATGAATAAGGATCCAAACGTAAAATGGCAACTC
TCTACTAGAGAGTGATAACAGGCGGAAGACATTCTTTCGTGTGAATGGCTTACTCTTTATTTGGTGTGATGCTTTTTC
AAAACAATCCTGACAAGGTAGCTGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGCAGGAGTTCTCTTGCCATTCTTGAAGTGG
GTCATTGGTGGCAGTGGCTCAAAGGGTTTCAAGCTTCTTAACTTTGTTGTTCGATCTCCATGGAATACCATTGATGTCATTGGTGAGATCAGGCA
ACCAATCCTCTTCCTATCTGGATTACAAGATGAGATGGTTCCACCATTCCACATGCAGATGCTGTATGCAAAGGCAGCGGCACGTAACAGGCAAT
GCTTATTTGTGGAATTTCCTAGTGGGATGCACATGGATACCTGGTTGGCAGGTGGTGATCATTATTGGAGGACAATTCAGAAATATTTGGAAGAA
ACTGTCCCAGAGAAGAAGGATGATGAATCAAAGAAGGATTCCGAACTGTCCTCTAAGCAAAATGTATCTTCAGATTTCGCTGCAAGCTGAAATGT
TGAGTTTCAGGCAGTTCAAATGTAACTTTGGATTCGAGGATTCAAATACATTTCTTTTGATGTTGCAGTGATGAAGAGCAGTTTGTGATATCAAG
GGAATGGAAGTGCATCCTTTCAAATATTTATTCTTCTGATGATATTTTTTGGTGTCCTATTTTCAGAAGGTAAAAAGATGTGAAGGGTCTTGATT
TATACTGCATCTCACTAACAATACTAGGGTGTCGAAATATAGGTCCAGCTGAGTTGTTTTGTATGAATAAGGATCCAAACGTAAAATGGCAACTC
TCTACTAGAGAGTGATAACAGGCGGAAGACATTCTTTCGTGTGAATGGCTTACTCTTTATTTGGTGTGATGCTTTTTC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378277] | SGN-U572689 | Tomato 200607 | Build 2 | 15 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1471 [Download] [View] | Facility Assigned ID: TUS27J17.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.975 | Expected Error Rate: 0.0107 | Quality Trim Threshold: 14.5 |
Working
