EST details — SGN-E378390
| Search information |
| Request: 378390 | Match: SGN-E378390 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C178159 | Clone name: TUS-28-G21 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C178159 is on microarray TOM1 spot ID 1-1-4.3.4.10 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C178159 [TUS-28-G21] | Trace: SGN-T183296 | EST: SGN-E370369 | Direction: 3' | Facility: INRA |
| Clone: SGN-C178159 [TUS-28-G21] | Trace: SGN-T183297 | EST: SGN-E370370 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378390 | Length: 930 bp (1263 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378390 [] (trimmed)
GGNGCTGAAGAAATTCAATACGCCTCTGACGCTCTTTATAAAGAAATTCTCATATTGATCTGCTAAAGACGACGCTGCTATTATTAACACTGTTC
ATTGGTTTATCTCTGTTGTTTCGCAATTTTGCCGTTTTGTATTTGATAGAGTAATTCTCTTTTTTCTGTATCTATGGATGCAGGGAGCAGATACA
ATAAGTTTCGACCTCCTCTCGTTAATCAGATGTCTCACAAGAAAAGAACTCGAGAGAATCTGGACAGGTTTATACCCAATCGTTCTGCGATGGAT
TTTGACTATGCACATTACATGCTCAGTGGTGGGAAGGTTAAAAAGGAACACTATGGAGTAAATTCTCCATCTAAAGAAGCTTACTCGAAGCAGTT
AGCAGAAATTTTCAACATGAACAGAACGAGGATCCTTGCTTTTAAGAATAAGCCTCCACATTCGGCTGAGAGAGTTTCTGAATCTCCATCATCTA
TACAACAGCCAAAAACCGTTAAAAAGAGGAGATACATTCCCCAATCTTCGGAGAGGACCCTGGATGCTCCTGACATCCTAGATGACTTTTATCTC
AATTTGTTAGACTGGGGAAGCAATAACGTAATTGCCATTGCCTTAGGAAATTCTGTATATCTATGGGATGCTTCTGATGGGTCTGTTACTGAGCT
TCTCACGGTTGATGATGATTTTGGGCCGGTGACTGCTGTCAGCTGGTCACCAGATGGAAGAAGCCTTGCAGTGGGCTTGAATAATTCACACGTTC
AGCTGTGGAACACCTTGCAGGGATCTAGCCGATTGCTGAGGACTTTACAAGGACACAGATTAAGGGTTGGCTCACTCGATTGGAATGGACACATA
CTGACAACTGGGGGCATGGACGGTATGATCATCAACAATGACGTGCGTATAAGATCTCCATAGTTGGAACATATA
ATTGGTTTATCTCTGTTGTTTCGCAATTTTGCCGTTTTGTATTTGATAGAGTAATTCTCTTTTTTCTGTATCTATGGATGCAGGGAGCAGATACA
ATAAGTTTCGACCTCCTCTCGTTAATCAGATGTCTCACAAGAAAAGAACTCGAGAGAATCTGGACAGGTTTATACCCAATCGTTCTGCGATGGAT
TTTGACTATGCACATTACATGCTCAGTGGTGGGAAGGTTAAAAAGGAACACTATGGAGTAAATTCTCCATCTAAAGAAGCTTACTCGAAGCAGTT
AGCAGAAATTTTCAACATGAACAGAACGAGGATCCTTGCTTTTAAGAATAAGCCTCCACATTCGGCTGAGAGAGTTTCTGAATCTCCATCATCTA
TACAACAGCCAAAAACCGTTAAAAAGAGGAGATACATTCCCCAATCTTCGGAGAGGACCCTGGATGCTCCTGACATCCTAGATGACTTTTATCTC
AATTTGTTAGACTGGGGAAGCAATAACGTAATTGCCATTGCCTTAGGAAATTCTGTATATCTATGGGATGCTTCTGATGGGTCTGTTACTGAGCT
TCTCACGGTTGATGATGATTTTGGGCCGGTGACTGCTGTCAGCTGGTCACCAGATGGAAGAAGCCTTGCAGTGGGCTTGAATAATTCACACGTTC
AGCTGTGGAACACCTTGCAGGGATCTAGCCGATTGCTGAGGACTTTACAAGGACACAGATTAAGGGTTGGCTCACTCGATTGGAATGGACACATA
CTGACAACTGGGGGCATGGACGGTATGATCATCAACAATGACGTGCGTATAAGATCTCCATAGTTGGAACATATA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378390] | SGN-U571433 | Tomato 200607 | Build 2 | 11 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1479 [Download] [View] | Facility Assigned ID: TUS28G21.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.977 | Expected Error Rate: 0.0049 | Quality Trim Threshold: 14.5 |
Working
