EST details — SGN-E378763
| Search information |
| Request: 378763 | Match: SGN-E378763 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C178390 | Clone name: TUS-29-A12 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C178390 is on microarray TOM1 spot ID 1-1-5.1.4.17 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C65289 [cLEM-8-O10] | Trace: SGN-T85384 | EST: SGN-E271833 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C178390 [TUS-29-A12] | Trace: SGN-T183882 | EST: SGN-E371553 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378763 | Length: 963 bp (1238 bp untrimmed) |
| Status: Current Version | Direction: 5' |
>SGN-E378763 [] (trimmed)
GAACGAGGCTTCATTCCACCGATCCAGATCTCAAATCTCCGAGAGAGTGAAGAAGACGAAGAAGAAAATTGATTAGTAATGGCGGCCGTATCGCC
ATTAGCAAAGTATAAGCTTGTGTTTTTGGGCGATCAATCTGTTGGAAAAACCAGCATCATTACTCGCTTCATGTACGATAAATTCGATACCACCT
ACCAGGCTACCATTGGTATCGATTTTTTGTCCAAGACAATGTACCTTGAAGATCGTACAGTTCGCTTGCAGCTCTGGGATACTGCTGGTCAAGAG
AGATTTAGGAGTCTTATTCCCAGCTACATTAGAGATTCTTCTGTCGCTGTAATTGTGTTTGATGTTGCCAACCGTCAATCATTTCTAAACACTTC
AAAGTGGATTGAGGAAGTACGTACTGAACGGGGAACTGATGTCATAATCGTTCTTGTTGGGAACAAAACTGATCTTGTTGAGAAAAGGCAAGTAT
CCATCGAAGAAGGTGAATCCAAGGCTCGCGAGTTTAATGTAATGTTTATAGAAACTAGTGCTAAAGCAGGATTCAATATCAAGCCTCTGTTCCGA
AAGATTGCTGCTGCTTTACCTGGAATGGAAGCCCTTTCGTCCACGAAGCAAGAAGATATGGTGGATGTGAATTTGAAGCCTACCACAAGTTCATC
TAACGCAGAGCAGCAAGGTGGAGGTTGTGCATGCTAGATTTTGTACGTAACAAGAGAGAGATAACAAGTTGGACATACACAAAGATGCAGTTGCA
TCAAATTATATCATAATATATATAGATGTTCAATTAGCTCATTTTGTTAGATCATTATGAGTTTTGGAACANTTTTGGGTTTTTATTCATGTTGT
ACAACAGTTCTTTTCATTCTGATGGTGAGGTAGCTGACACTCTGTTGTTACTATGAAAACTTGTGATATATATTATGTGATGTGATCCTAGTTCA
GGAATCTTTCTTT
ATTAGCAAAGTATAAGCTTGTGTTTTTGGGCGATCAATCTGTTGGAAAAACCAGCATCATTACTCGCTTCATGTACGATAAATTCGATACCACCT
ACCAGGCTACCATTGGTATCGATTTTTTGTCCAAGACAATGTACCTTGAAGATCGTACAGTTCGCTTGCAGCTCTGGGATACTGCTGGTCAAGAG
AGATTTAGGAGTCTTATTCCCAGCTACATTAGAGATTCTTCTGTCGCTGTAATTGTGTTTGATGTTGCCAACCGTCAATCATTTCTAAACACTTC
AAAGTGGATTGAGGAAGTACGTACTGAACGGGGAACTGATGTCATAATCGTTCTTGTTGGGAACAAAACTGATCTTGTTGAGAAAAGGCAAGTAT
CCATCGAAGAAGGTGAATCCAAGGCTCGCGAGTTTAATGTAATGTTTATAGAAACTAGTGCTAAAGCAGGATTCAATATCAAGCCTCTGTTCCGA
AAGATTGCTGCTGCTTTACCTGGAATGGAAGCCCTTTCGTCCACGAAGCAAGAAGATATGGTGGATGTGAATTTGAAGCCTACCACAAGTTCATC
TAACGCAGAGCAGCAAGGTGGAGGTTGTGCATGCTAGATTTTGTACGTAACAAGAGAGAGATAACAAGTTGGACATACACAAAGATGCAGTTGCA
TCAAATTATATCATAATATATATAGATGTTCAATTAGCTCATTTTGTTAGATCATTATGAGTTTTGGAACANTTTTGGGTTTTTATTCATGTTGT
ACAACAGTTCTTTTCATTCTGATGGTGAGGTAGCTGACACTCTGTTGTTACTATGAAAACTTGTGATATATATTATGTGATGTGATCCTAGTTCA
GGAATCTTTCTTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378763] | SGN-U579137 | Tomato 200607 | Build 2 | 14 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1482 [Download] [View] | Facility Assigned ID: TUS29A12.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.980 | Expected Error Rate: 0.0082 | Quality Trim Threshold: 14.5 |
Working
