EST details — SGN-E378885
| Search information |
| Request: 378885 | Match: SGN-E378885 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C168741 | Clone name: TUS-3-O11 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C6252 [cLEC-34-N5] | Trace: SGN-T30403 | EST: SGN-E207959 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C168741 [TUS-3-O11] | Trace: SGN-T637 | EST: SGN-E379389 | Direction: 5' | Facility: Avesthagen |
| Sequence |
| Sequence Id: SGN-E378885 | Length: 678 bp (798 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E378885 [] (trimmed)
TAAGTTTCCAAATCACCAAGCAGAAAATCAACAGATAAAAAGTATCACCCTAAACTGCAACCATCAAATTATAAGAAACTTTACACTTTACCTCT
AAGGTTGAGAAGGACTCTTTAATGGAAGGAACTTCTTCCGTAAGAGAACACATGAGAAGGCAAATGGAATTGCAACCATGGACTTAAGAAAACGT
TCAGCAGGACCGAGCTGAGAAATGTCTCCAGCAAATACTCTCTTGAGTTTTAGTTCTTCATCTGTTTGTTGGTGCCATCTTCAAGAGAGTTCGTC
TGAGTTCAGGAGGCAGCTCATTACCCTCATCAAGAGCATCATAAAGTTCTGTTGTCACATTTAAGGCTTTGAGGAGAATTGCTAGATTTTGTGAT
TTCTTAGGATCAACAATCTGAATGTACTGTGAGGTTTGATCAAAGGATGAGGAAACTTTTATAAGATCATCTTTCCCTTGGTCTACTGGTATATA
TCCAAACAAAGAATCCATCATCTCGTCATTAAACCTGTCATAAAATTCAGCAATCAGAATGGTAAAACAGAAAAAGTTCAACTCTTGCAGGAGCG
AAGTGAATAGCAAGATCAGTGCGAAGTTTACTGGAACGAGCGACTTTTATTTTCAGCCAAACCATAAAGTGGTCAGGGTTAGCAAGAAACTTGTC
CCAAAAGAATGGT
AAGGTTGAGAAGGACTCTTTAATGGAAGGAACTTCTTCCGTAAGAGAACACATGAGAAGGCAAATGGAATTGCAACCATGGACTTAAGAAAACGT
TCAGCAGGACCGAGCTGAGAAATGTCTCCAGCAAATACTCTCTTGAGTTTTAGTTCTTCATCTGTTTGTTGGTGCCATCTTCAAGAGAGTTCGTC
TGAGTTCAGGAGGCAGCTCATTACCCTCATCAAGAGCATCATAAAGTTCTGTTGTCACATTTAAGGCTTTGAGGAGAATTGCTAGATTTTGTGAT
TTCTTAGGATCAACAATCTGAATGTACTGTGAGGTTTGATCAAAGGATGAGGAAACTTTTATAAGATCATCTTTCCCTTGGTCTACTGGTATATA
TCCAAACAAAGAATCCATCATCTCGTCATTAAACCTGTCATAAAATTCAGCAATCAGAATGGTAAAACAGAAAAAGTTCAACTCTTGCAGGAGCG
AAGTGAATAGCAAGATCAGTGCGAAGTTTACTGGAACGAGCGACTTTTATTTTCAGCCAAACCATAAAGTGGTCAGGGTTAGCAAGAAACTTGTC
CCAAAAGAATGGT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378885] | SGN-U572577 | Tomato 200607 | Build 2 | 6 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1023 [Download] [View] | Facility Assigned ID: 240_G11_TUS03O11.Td_084.ab1 |
| Submitter: Koni | Sequencing Facility: Avesthagen |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.955 | Expected Error Rate: 0.0019 | Quality Trim Threshold: 20.5 |
Working
