EST details — SGN-E378923
| Search information |
| Request: 378923 | Match: SGN-E378923 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C167703 | Clone name: TUS-1-D5 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C923 [cLEC-10-B21] | Trace: SGN-T24731 | EST: SGN-E201144 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C167703 [TUS-1-D5] | Trace: SGN-T1139 | EST: SGN-E379687 | Direction: 5' | Facility: Avesthagen |
| Sequence |
| Sequence Id: SGN-E378923 | Length: 777 bp (796 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E378923 [] (trimmed)
GGATGACGATTTTTTATTCCATATAATAACTATGAGGAGTCACATATTGCTTTATTTCTAACAAGCTATCATGATCAGAGTTTGATAAAATATAT
ACACTACTATTTACATATTAATTTTGGAATGACATTGCAACGTCAACAGAATTTACTCAGTAAATTGAGCTTACTGATTCAGTAGACAGATGTGA
GTCTAACTGGAACAACCTTCTCTCTAGCTGTATCACTGAATCCACCAGCCACAATTCTCACCACTTTCTTAAACGCAAAATGCAAGCAATTCGAC
AACGCAGCCCAACACATCAACTCATAGACAAAATCAAAAGCCGGATCAGAAAACGAGTTCGACGAAGATTCTTCCCAATTTGCCCCTCCAAATCC
ATCAAAATTCCATCCTCTACCACCACCACCACCACCGCCCCAGCTACTACCACCACCAAACGGCCCGTCATAATTACCTCCATCAAATAAAAATC
CGTTTTCATCACCTTCATCAGCTCCACCGATCAACGACTTCCGTATAATCCGCCTTGTCTTACGAGCCAGTCTTCGAGGTGCGGCTTTGACCTTA
TTGTACTTTACAGGAGGCGGCGCTAAGGCATCGATCGGACAAATCACAGCGGAAATTTGACGAACTCCGGCGGTGGAAGGTGATTGCTGCTCCGA
TGAGGAATCGGAGATTGAGAAAAGTTGTTTGATGAGAAATTGAGATTGCGATTCAGCAGAAACTTTTGAACACCTAAGCCTTGAGTGGTTACCAC
CGCCGTTAGCGTATCGG
ACACTACTATTTACATATTAATTTTGGAATGACATTGCAACGTCAACAGAATTTACTCAGTAAATTGAGCTTACTGATTCAGTAGACAGATGTGA
GTCTAACTGGAACAACCTTCTCTCTAGCTGTATCACTGAATCCACCAGCCACAATTCTCACCACTTTCTTAAACGCAAAATGCAAGCAATTCGAC
AACGCAGCCCAACACATCAACTCATAGACAAAATCAAAAGCCGGATCAGAAAACGAGTTCGACGAAGATTCTTCCCAATTTGCCCCTCCAAATCC
ATCAAAATTCCATCCTCTACCACCACCACCACCACCGCCCCAGCTACTACCACCACCAAACGGCCCGTCATAATTACCTCCATCAAATAAAAATC
CGTTTTCATCACCTTCATCAGCTCCACCGATCAACGACTTCCGTATAATCCGCCTTGTCTTACGAGCCAGTCTTCGAGGTGCGGCTTTGACCTTA
TTGTACTTTACAGGAGGCGGCGCTAAGGCATCGATCGGACAAATCACAGCGGAAATTTGACGAACTCCGGCGGTGGAAGGTGATTGCTGCTCCGA
TGAGGAATCGGAGATTGAGAAAAGTTGTTTGATGAGAAATTGAGATTGCGATTCAGCAGAAACTTTTGAACACCTAAGCCTTGAGTGGTTACCAC
CGCCGTTAGCGTATCGG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378923] | SGN-U567501 | Tomato 200607 | Build 2 | 7 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T197 [Download] [View] | Facility Assigned ID: 227_D05_TUS01D5.Td_044.ab1 |
| Submitter: Koni | Sequencing Facility: Avesthagen |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.975 | Expected Error Rate: 0.0057 | Quality Trim Threshold: 20.5 |
Working
