EST details — SGN-E378923
Search information |
Request: 378923 | Match: SGN-E378923 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C167703 | Clone name: TUS-1-D5 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C923 [cLEC-10-B21] | Trace: SGN-T24731 | EST: SGN-E201144 | Direction: 5' | Facility: TIGR |
Clone: SGN-C167703 [TUS-1-D5] | Trace: SGN-T1139 | EST: SGN-E379687 | Direction: 5' | Facility: Avesthagen |
Sequence |
Sequence Id: SGN-E378923 | Length: 777 bp (796 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E378923 [] (trimmed)
GGATGACGATTTTTTATTCCATATAATAACTATGAGGAGTCACATATTGCTTTATTTCTAACAAGCTATCATGATCAGAGTTTGATAAAATATAT
ACACTACTATTTACATATTAATTTTGGAATGACATTGCAACGTCAACAGAATTTACTCAGTAAATTGAGCTTACTGATTCAGTAGACAGATGTGA
GTCTAACTGGAACAACCTTCTCTCTAGCTGTATCACTGAATCCACCAGCCACAATTCTCACCACTTTCTTAAACGCAAAATGCAAGCAATTCGAC
AACGCAGCCCAACACATCAACTCATAGACAAAATCAAAAGCCGGATCAGAAAACGAGTTCGACGAAGATTCTTCCCAATTTGCCCCTCCAAATCC
ATCAAAATTCCATCCTCTACCACCACCACCACCACCGCCCCAGCTACTACCACCACCAAACGGCCCGTCATAATTACCTCCATCAAATAAAAATC
CGTTTTCATCACCTTCATCAGCTCCACCGATCAACGACTTCCGTATAATCCGCCTTGTCTTACGAGCCAGTCTTCGAGGTGCGGCTTTGACCTTA
TTGTACTTTACAGGAGGCGGCGCTAAGGCATCGATCGGACAAATCACAGCGGAAATTTGACGAACTCCGGCGGTGGAAGGTGATTGCTGCTCCGA
TGAGGAATCGGAGATTGAGAAAAGTTGTTTGATGAGAAATTGAGATTGCGATTCAGCAGAAACTTTTGAACACCTAAGCCTTGAGTGGTTACCAC
CGCCGTTAGCGTATCGG
ACACTACTATTTACATATTAATTTTGGAATGACATTGCAACGTCAACAGAATTTACTCAGTAAATTGAGCTTACTGATTCAGTAGACAGATGTGA
GTCTAACTGGAACAACCTTCTCTCTAGCTGTATCACTGAATCCACCAGCCACAATTCTCACCACTTTCTTAAACGCAAAATGCAAGCAATTCGAC
AACGCAGCCCAACACATCAACTCATAGACAAAATCAAAAGCCGGATCAGAAAACGAGTTCGACGAAGATTCTTCCCAATTTGCCCCTCCAAATCC
ATCAAAATTCCATCCTCTACCACCACCACCACCACCGCCCCAGCTACTACCACCACCAAACGGCCCGTCATAATTACCTCCATCAAATAAAAATC
CGTTTTCATCACCTTCATCAGCTCCACCGATCAACGACTTCCGTATAATCCGCCTTGTCTTACGAGCCAGTCTTCGAGGTGCGGCTTTGACCTTA
TTGTACTTTACAGGAGGCGGCGCTAAGGCATCGATCGGACAAATCACAGCGGAAATTTGACGAACTCCGGCGGTGGAAGGTGATTGCTGCTCCGA
TGAGGAATCGGAGATTGAGAAAAGTTGTTTGATGAGAAATTGAGATTGCGATTCAGCAGAAACTTTTGAACACCTAAGCCTTGAGTGGTTACCAC
CGCCGTTAGCGTATCGG
Unigenes |
Current Unigene builds | |||||
[SGN-E378923] | SGN-U567501 | Tomato 200607 | Build 2 | 7 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T197 [Download] [View] | Facility Assigned ID: 227_D05_TUS01D5.Td_044.ab1 |
Submitter: Koni | Sequencing Facility: Avesthagen |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.975 | Expected Error Rate: 0.0057 | Quality Trim Threshold: 20.5 |