EST details — SGN-E379050
| Search information |
| Request: 379050 | Match: SGN-E379050 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C168479 | Clone name: TUS-3-D13 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C168479 [TUS-3-D13] | Trace: SGN-T352 | EST: SGN-E379781 | Direction: 5' | Facility: Avesthagen |
| Sequence |
| Sequence Id: SGN-E379050 | Length: 772 bp (782 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E379050 [] (trimmed)
TTGACTTGTCTGCTCATTCTTGTCAACAAGAGGGAGGACTGTTTAGATTGATTCAAACACGAATTCATATAAGGACAAAACCAAATAATCAGAAA
GAAAAATAGAGCATCACTTTAGTGAAATAATTTCTTTTATTGATACCAAAGAATTTCCTATGGCTTCTGCCACAACTCTAGTTGGTGCACACATT
CGAAACTCCGGGTTATATGGACCTTCCATGTATCCTCTTTCCGACTTAAATACTAGACTTCATTTACTGCACGATCATACTCATGAAGTGCACTT
AATCCACACATCACGTGTTGCATCCTTATCACTGACCAAACCCCCGCGGGGTAATAATAATTTCTTCCTAAAATAAATTCAATTGCCATTCACAA
AAGAGTAATTGATTATCTAGGTGTCACCTGAGTGATTGTAAGGGGCACAGAACTCATTTGATGACTTGTGCTGCTTTCGGATGACTTCAGTTTTA
GTTGTGTGCTGCTAAAACCACCCGAATCTTGGAAAAATCCTGGTGGTGTGAGTTCTTTCTCGTTGAGCTTGATGTTTCTTGTGAGCATGTCAAGA
ACCTGGCTCATCATCGGTCTTCGATTTGCCTTTTCTTGTGTGCAAAAGAGAGCTACCTTAATGTACTTGAGGACTTGTTTTTCTGGAAAATCGCC
CATTTCTGGATCGACCAACTCTAACAGCTTTCCCTCTTCGTAGAACTCCCATGCCGATTCTAGGAGTAACTTCTGCCCTTGCCATGTACCACTGC
CACTACTCCTGC
GAAAAATAGAGCATCACTTTAGTGAAATAATTTCTTTTATTGATACCAAAGAATTTCCTATGGCTTCTGCCACAACTCTAGTTGGTGCACACATT
CGAAACTCCGGGTTATATGGACCTTCCATGTATCCTCTTTCCGACTTAAATACTAGACTTCATTTACTGCACGATCATACTCATGAAGTGCACTT
AATCCACACATCACGTGTTGCATCCTTATCACTGACCAAACCCCCGCGGGGTAATAATAATTTCTTCCTAAAATAAATTCAATTGCCATTCACAA
AAGAGTAATTGATTATCTAGGTGTCACCTGAGTGATTGTAAGGGGCACAGAACTCATTTGATGACTTGTGCTGCTTTCGGATGACTTCAGTTTTA
GTTGTGTGCTGCTAAAACCACCCGAATCTTGGAAAAATCCTGGTGGTGTGAGTTCTTTCTCGTTGAGCTTGATGTTTCTTGTGAGCATGTCAAGA
ACCTGGCTCATCATCGGTCTTCGATTTGCCTTTTCTTGTGTGCAAAAGAGAGCTACCTTAATGTACTTGAGGACTTGTTTTTCTGGAAAATCGCC
CATTTCTGGATCGACCAACTCTAACAGCTTTCCCTCTTCGTAGAACTCCCATGCCGATTCTAGGAGTAACTTCTGCCCTTGCCATGTACCACTGC
CACTACTCCTGC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E379050] | SGN-U577220 | Tomato 200607 | Build 2 | 8 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T896 [Download] [View] | Facility Assigned ID: 239_D01_TUS03D13.Td_012.ab1 |
| Submitter: Koni | Sequencing Facility: Avesthagen |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.971 | Expected Error Rate: 0.0033 | Quality Trim Threshold: 20.5 |
Working
