EST details — SGN-E379106
Search information |
Request: 379106 | Match: SGN-E379106 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C167649 | Clone name: TUS-1-A23 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C3215 [cLEC-1-I15] | Trace: SGN-T24549 | EST: SGN-E200336 | Direction: 5' | Facility: TIGR |
Clone: SGN-C3215 [cLEC-1-I15] | Trace: SGN-T24550 | EST: SGN-E200337 | Direction: 3' | Facility: TIGR |
Clone: SGN-C167649 [TUS-1-A23] | Trace: SGN-T1191 | EST: SGN-E379901 | Direction: 5' | Facility: Avesthagen |
Sequence |
Sequence Id: SGN-E379106 | Length: 646 bp (809 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E379106 [] (trimmed)
GATTCCGAATATGGATAATTATAACATTCTAATGAAAAAGTAGACTACACATGCATAATGCATACACCTCCAAGGCCCTCTAAAAAGATCTTTTT
TTTTTTTACTCGGAACTAAGTTATACTCTACAAGAGAGCAAATAGATCGAGTTATTAAATAACAAGTCGCCATTGGGTATGATTCTTGAAATAGC
CAAGACGACTATCAGCCAAACGTAATGAATACCCAATTTGTTTAAAGTCCCCCCACTTGAAAGGCTTATAAATATTAGTAATATTGTTGATTTGA
GGAGGAGCACTTATCCAAGGGCCAAAAGCAGGAGCTGCAAAGTACTTCATGGACATTCTACTTTTCCATGAATTTATTGACACCACTCTATGTCT
TACACTGGGAAATCTACCATTCGCCAACGCCTGAAAGGAGTCCCCTACGAAAACGAAGAACTCATTAGGATCAGGAGGAACGGGTATCCAAAATC
CCTCATGAGTATATATTTGAAGTCCACTAACGTCGTTTGATCGAAGGATTGTAAGTATTGGGGGATCAGTATGTGCTCCAAATCCAACTCTTGAT
TTTGATGGATTTGGGGATAGGCCCCAATGATTATTGTTAAGCCCATCTTGATTATCATCATTATTAGGCGTGACAA
TTTTTTTACTCGGAACTAAGTTATACTCTACAAGAGAGCAAATAGATCGAGTTATTAAATAACAAGTCGCCATTGGGTATGATTCTTGAAATAGC
CAAGACGACTATCAGCCAAACGTAATGAATACCCAATTTGTTTAAAGTCCCCCCACTTGAAAGGCTTATAAATATTAGTAATATTGTTGATTTGA
GGAGGAGCACTTATCCAAGGGCCAAAAGCAGGAGCTGCAAAGTACTTCATGGACATTCTACTTTTCCATGAATTTATTGACACCACTCTATGTCT
TACACTGGGAAATCTACCATTCGCCAACGCCTGAAAGGAGTCCCCTACGAAAACGAAGAACTCATTAGGATCAGGAGGAACGGGTATCCAAAATC
CCTCATGAGTATATATTTGAAGTCCACTAACGTCGTTTGATCGAAGGATTGTAAGTATTGGGGGATCAGTATGTGCTCCAAATCCAACTCTTGAT
TTTGATGGATTTGGGGATAGGCCCCAATGATTATTGTTAAGCCCATCTTGATTATCATCATTATTAGGCGTGACAA
Unigenes |
Current Unigene builds | |||||
[SGN-E379106] | SGN-U568917 | Tomato 200607 | Build 2 | 19 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T411 [Download] [View] | Facility Assigned ID: 230_A11_TUS01A23.Td_081.ab1 |
Submitter: Koni | Sequencing Facility: Avesthagen |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.960 | Expected Error Rate: 0.0155 | Quality Trim Threshold: 20.5 |