EST details — SGN-E379106
| Search information |
| Request: 379106 | Match: SGN-E379106 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C167649 | Clone name: TUS-1-A23 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C3215 [cLEC-1-I15] | Trace: SGN-T24549 | EST: SGN-E200336 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C3215 [cLEC-1-I15] | Trace: SGN-T24550 | EST: SGN-E200337 | Direction: 3' | Facility: TIGR |
| Clone: SGN-C167649 [TUS-1-A23] | Trace: SGN-T1191 | EST: SGN-E379901 | Direction: 5' | Facility: Avesthagen |
| Sequence |
| Sequence Id: SGN-E379106 | Length: 646 bp (809 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E379106 [] (trimmed)
GATTCCGAATATGGATAATTATAACATTCTAATGAAAAAGTAGACTACACATGCATAATGCATACACCTCCAAGGCCCTCTAAAAAGATCTTTTT
TTTTTTTACTCGGAACTAAGTTATACTCTACAAGAGAGCAAATAGATCGAGTTATTAAATAACAAGTCGCCATTGGGTATGATTCTTGAAATAGC
CAAGACGACTATCAGCCAAACGTAATGAATACCCAATTTGTTTAAAGTCCCCCCACTTGAAAGGCTTATAAATATTAGTAATATTGTTGATTTGA
GGAGGAGCACTTATCCAAGGGCCAAAAGCAGGAGCTGCAAAGTACTTCATGGACATTCTACTTTTCCATGAATTTATTGACACCACTCTATGTCT
TACACTGGGAAATCTACCATTCGCCAACGCCTGAAAGGAGTCCCCTACGAAAACGAAGAACTCATTAGGATCAGGAGGAACGGGTATCCAAAATC
CCTCATGAGTATATATTTGAAGTCCACTAACGTCGTTTGATCGAAGGATTGTAAGTATTGGGGGATCAGTATGTGCTCCAAATCCAACTCTTGAT
TTTGATGGATTTGGGGATAGGCCCCAATGATTATTGTTAAGCCCATCTTGATTATCATCATTATTAGGCGTGACAA
TTTTTTTACTCGGAACTAAGTTATACTCTACAAGAGAGCAAATAGATCGAGTTATTAAATAACAAGTCGCCATTGGGTATGATTCTTGAAATAGC
CAAGACGACTATCAGCCAAACGTAATGAATACCCAATTTGTTTAAAGTCCCCCCACTTGAAAGGCTTATAAATATTAGTAATATTGTTGATTTGA
GGAGGAGCACTTATCCAAGGGCCAAAAGCAGGAGCTGCAAAGTACTTCATGGACATTCTACTTTTCCATGAATTTATTGACACCACTCTATGTCT
TACACTGGGAAATCTACCATTCGCCAACGCCTGAAAGGAGTCCCCTACGAAAACGAAGAACTCATTAGGATCAGGAGGAACGGGTATCCAAAATC
CCTCATGAGTATATATTTGAAGTCCACTAACGTCGTTTGATCGAAGGATTGTAAGTATTGGGGGATCAGTATGTGCTCCAAATCCAACTCTTGAT
TTTGATGGATTTGGGGATAGGCCCCAATGATTATTGTTAAGCCCATCTTGATTATCATCATTATTAGGCGTGACAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E379106] | SGN-U568917 | Tomato 200607 | Build 2 | 19 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T411 [Download] [View] | Facility Assigned ID: 230_A11_TUS01A23.Td_081.ab1 |
| Submitter: Koni | Sequencing Facility: Avesthagen |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.960 | Expected Error Rate: 0.0155 | Quality Trim Threshold: 20.5 |
Working
