EST details — SGN-E379337
Search information |
Request: 379337 | Match: SGN-E379337 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C167702 | Clone name: TUS-1-D4 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C1492 [cLEC-12-L20] | Trace: SGN-T25886 | EST: SGN-E200301 | Direction: 5' | Facility: TIGR |
Clone: SGN-C167702 [TUS-1-D4] | Trace: SGN-T1138 | EST: SGN-E379602 | Direction: 5' | Facility: Avesthagen |
Sequence |
Sequence Id: SGN-E379337 | Length: 764 bp (786 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E379337 [] (trimmed)
TGCATAAGTAGCTCAAATCGGAAACTTGAATAAATCTCCAAGACTCATTCTCAACAAAAAGCAGAACATAATACTTCAAAAACTAGGATGTAATG
TAACAAAAGTTCAAATTTTTACTCACTCCAGTACTTCTCTTCACCATCTTTATGATCTTTTTGATCTTCAAATCCTTTATCCAAACTCATCTTAA
ACTTGTTCACATCCTCCACAGCTGCATTTCTAAACAACGCGATATCTACTGCTCCTGAAACCATATGGTACCCTCTTGATTTCAAATTCTCAGGA
CTATCATGAGGCATTGCAAATCCAGATAAATACGCCCCACCGTCAAGTGGCTTCTTCTTCAATGCTCCTTTTTCAGCTGTATTCATCATCTCCTT
CACTTTCTTATTCCCAGGATCCCATAAGTACCCTAAACTCGCACTCAAATCCAATGGTCCCATTTGAATACAATCAACCCCTTCCACTGCTGCAA
TTTCATCAATCTTCTTCACTCCATCTACACACTCAACTTGACACATGATCAGTAGATCATCCTCGTAATTACTCAAATACCCTTCATCAATTCCA
TAGCTCGAAGCTCTAACAACAGTATGAGCAGATCCACGTACGCCATTAGGCGGGAAACGGCAGTAAGACACTGCCTTTCGGGCTGATTTCGGACC
GTCGATCATCGGAAACATAATGCCCTGTGGGCCGAGATCGAGGGCTTTTTTAGCCCAAGTAGCTGAGGATTCAGGGATACGGAGAATAGCTGGGG
TTTG
TAACAAAAGTTCAAATTTTTACTCACTCCAGTACTTCTCTTCACCATCTTTATGATCTTTTTGATCTTCAAATCCTTTATCCAAACTCATCTTAA
ACTTGTTCACATCCTCCACAGCTGCATTTCTAAACAACGCGATATCTACTGCTCCTGAAACCATATGGTACCCTCTTGATTTCAAATTCTCAGGA
CTATCATGAGGCATTGCAAATCCAGATAAATACGCCCCACCGTCAAGTGGCTTCTTCTTCAATGCTCCTTTTTCAGCTGTATTCATCATCTCCTT
CACTTTCTTATTCCCAGGATCCCATAAGTACCCTAAACTCGCACTCAAATCCAATGGTCCCATTTGAATACAATCAACCCCTTCCACTGCTGCAA
TTTCATCAATCTTCTTCACTCCATCTACACACTCAACTTGACACATGATCAGTAGATCATCCTCGTAATTACTCAAATACCCTTCATCAATTCCA
TAGCTCGAAGCTCTAACAACAGTATGAGCAGATCCACGTACGCCATTAGGCGGGAAACGGCAGTAAGACACTGCCTTTCGGGCTGATTTCGGACC
GTCGATCATCGGAAACATAATGCCCTGTGGGCCGAGATCGAGGGCTTTTTTAGCCCAAGTAGCTGAGGATTCAGGGATACGGAGAATAGCTGGGG
TTTG
Unigenes |
Current Unigene builds | |||||
[SGN-E379337] | SGN-U582679 | Tomato 200607 | Build 2 | 15 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T196 [Download] [View] | Facility Assigned ID: 227_D04_TUS01D4.Td_032.ab1 |
Submitter: Koni | Sequencing Facility: Avesthagen |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.959 | Expected Error Rate: 0.0038 | Quality Trim Threshold: 20.5 |