EST details — SGN-E379400
| Search information |
| Request: 379400 | Match: SGN-E379400 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C168631 | Clone name: TUS-3-J21 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C7544 [cLEC-39-F22] | Trace: SGN-T31860 | EST: SGN-E208570 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C168631 [TUS-3-J21] | Trace: SGN-T1046 | EST: SGN-E380065 | Direction: 3' | Facility: Avesthagen |
| Sequence |
| Sequence Id: SGN-E379400 | Length: 735 bp (799 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E379400 [] (trimmed)
CGCACCAGATCTTCTACTTCTTTATCTCAAATTTCTCAGCTGACTGCATATTGAAAATCCTGAATCTCATCATTGTTGAAGACTTGCGAGTTTTC
TCATGTCAACTCCATTAGTTGTTGGAACTACCATTGGTGCTGCTGCTTTGGGAGCTAGATACTTGATAAGAGCGTGGCAAAGGTTCAAAGCAGCA
CCCCGAGTGAGGAGGTTTTATCCTGGGGGCTTTGATCGGGATATGACACGGCGAGAAGCAGCATTGATTCTCGGAGTTAGGGAAAGTGCTGTCTT
GCAGAAGATCAAGGAGGCTCACAGGAGAGTAATGGTAGCAAATCATCCAGACGCCGGTGGCAGCCATTATCTTGCTTCCAAGATCAATGAAGCCA
AGGACGTGTTGTTAGGGAAAACCAAGGGAGCTAATTCTGCATTTTAATTGACCAGTGTGTTCTTTACGCTGCGAATTCTTAACAGCTTCATGATA
GTCAACATTAAAATGGATCTTTTTCTGGGGAAAAGGAGAACATATTCTGTTTCGAGTTAAGAGGTGAATTTGTATCAACAGCTGGGTGCATTACT
GCCATAAATTTCATGTAATGCAACCAGAAATATTCTTTGCAGATTGTTTACAATAAAAAGTTGTATATTCCTGTTAACTATACTCTATTTTGAAC
CATTACTCGATCTGCATGTAGTATGTACGCAGTGGGTTCATCCCACCTACTGCTCGACTTGAACTAACTA
TCATGTCAACTCCATTAGTTGTTGGAACTACCATTGGTGCTGCTGCTTTGGGAGCTAGATACTTGATAAGAGCGTGGCAAAGGTTCAAAGCAGCA
CCCCGAGTGAGGAGGTTTTATCCTGGGGGCTTTGATCGGGATATGACACGGCGAGAAGCAGCATTGATTCTCGGAGTTAGGGAAAGTGCTGTCTT
GCAGAAGATCAAGGAGGCTCACAGGAGAGTAATGGTAGCAAATCATCCAGACGCCGGTGGCAGCCATTATCTTGCTTCCAAGATCAATGAAGCCA
AGGACGTGTTGTTAGGGAAAACCAAGGGAGCTAATTCTGCATTTTAATTGACCAGTGTGTTCTTTACGCTGCGAATTCTTAACAGCTTCATGATA
GTCAACATTAAAATGGATCTTTTTCTGGGGAAAAGGAGAACATATTCTGTTTCGAGTTAAGAGGTGAATTTGTATCAACAGCTGGGTGCATTACT
GCCATAAATTTCATGTAATGCAACCAGAAATATTCTTTGCAGATTGTTTACAATAAAAAGTTGTATATTCCTGTTAACTATACTCTATTTTGAAC
CATTACTCGATCTGCATGTAGTATGTACGCAGTGGGTTCATCCCACCTACTGCTCGACTTGAACTAACTA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E379400] | SGN-U573193 | Tomato 200607 | Build 2 | 4 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T736 [Download] [View] | Facility Assigned ID: 234_B09_TUS03J21.T3_073.ab1 |
| Submitter: Koni | Sequencing Facility: Avesthagen |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.977 | Expected Error Rate: 0.0038 | Quality Trim Threshold: 14.5 |
Working
