EST details — SGN-E379409
| Search information |
| Request: 379409 | Match: SGN-E379409 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C168476 | Clone name: TUS-3-D10 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C168476 [TUS-3-D10] | Trace: SGN-T281 | EST: SGN-E378929 | Direction: 5' | Facility: Avesthagen |
| Sequence |
| Sequence Id: SGN-E379409 | Length: 764 bp (808 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E379409 [] (trimmed)
GCATAACTTTTCCCTAAAATTCTCCAAGAACAGAAGAGATGCTATCCGACTGCCTGTCAAAAGAAATCAATTAACCAATTGAACTGGTGCAGAGA
GTAGAATCTCAACAGACAACTTGAGCAAAGCTCGAAACTATAGACAATGGCCTATTGATGTCCTTGATTATGTGGTGGAGGCCCTGGCGGCAGTG
GCGGAGGCATTCCAGATTGATGACCAAAGTTTGACTGCATGTGCATTCCAGGAGGTGTGTTTGGATTTCCAGATTGCTGATAAGGATTAAGTCCA
GGCATGAGCGGCATCTGTCCAGCTTGTGGCCTGTTGAAGCCTCGTACTGGTGGAAACATCTGATTGCCTCCTGCATTTTGAGGGCCTTGCATGTT
TGGCAATCCATTTGGCATTCCACCAGGGGGAACATTGCCCTGCGGTCCAGATCCAGGAGGCATGCCAACAAAATGACCTTGAGGCATTGGAGGGC
CCATCTGATTCATGTTACCTTGTATCCCCATCGGAGGCATTCCTTGGATGGGTCCAGATCCTGGCATTGAAGACTGAATGCCGGGCATGTTTACT
GGTTGTAGTTGATGTGGTGGCCGAGGTAGATGAGGATGTGGCATTAGAGGCATATGTGGAGGCTGTAGCTGTGGCAAATTCGGTGGTTGCAAAGG
AAGAGAAGTCATTTGTTGAGGCAGTGACTGCTGCTGAGCTTGCTGCATGTTTTGATGATATGCTTGCTGCTGATTACTTGCAAGAAGCGATGGAT
GTGG
GTAGAATCTCAACAGACAACTTGAGCAAAGCTCGAAACTATAGACAATGGCCTATTGATGTCCTTGATTATGTGGTGGAGGCCCTGGCGGCAGTG
GCGGAGGCATTCCAGATTGATGACCAAAGTTTGACTGCATGTGCATTCCAGGAGGTGTGTTTGGATTTCCAGATTGCTGATAAGGATTAAGTCCA
GGCATGAGCGGCATCTGTCCAGCTTGTGGCCTGTTGAAGCCTCGTACTGGTGGAAACATCTGATTGCCTCCTGCATTTTGAGGGCCTTGCATGTT
TGGCAATCCATTTGGCATTCCACCAGGGGGAACATTGCCCTGCGGTCCAGATCCAGGAGGCATGCCAACAAAATGACCTTGAGGCATTGGAGGGC
CCATCTGATTCATGTTACCTTGTATCCCCATCGGAGGCATTCCTTGGATGGGTCCAGATCCTGGCATTGAAGACTGAATGCCGGGCATGTTTACT
GGTTGTAGTTGATGTGGTGGCCGAGGTAGATGAGGATGTGGCATTAGAGGCATATGTGGAGGCTGTAGCTGTGGCAAATTCGGTGGTTGCAAAGG
AAGAGAAGTCATTTGTTGAGGCAGTGACTGCTGCTGAGCTTGCTGCATGTTTTGATGATATGCTTGCTGCTGATTACTTGCAAGAAGCGATGGAT
GTGG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E379409] | SGN-U576241 | Tomato 200607 | Build 2 | 13 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T825 [Download] [View] | Facility Assigned ID: 237_D10_TUS03D10.Td_080.ab1 |
| Submitter: Koni | Sequencing Facility: Avesthagen |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.965 | Expected Error Rate: 0.0064 | Quality Trim Threshold: 20.5 |
Working
