EST details — SGN-E379628
Search information |
Request: 379628 | Match: SGN-E379628 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C167751 | Clone name: TUS-1-F5 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C1000 [cLEC-10-G22] | Trace: SGN-T24705 | EST: SGN-E201118 | Direction: 5' | Facility: TIGR |
Clone: SGN-C167751 [TUS-1-F5] | Trace: SGN-T1156 | EST: SGN-E378987 | Direction: 5' | Facility: Avesthagen |
Sequence |
Sequence Id: SGN-E379628 | Length: 768 bp (809 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E379628 [] (trimmed)
TCGTCGAAAACACATTCCACAAGCAATCATAAGTAACTACAGCTAAGAGTACTTGACAAAACTGCATTTTGTCACTGAAATCAGAAACACAAACA
TCTTCTGGTGTACATTACAAGCAAAAGTTCAAGCTTTATCGCGTTTTAACATGAACAATAACGCGTTTACTGCAGAAAATCTCGAGGATCAGTAA
CATGGCCAGTTAATGCAGATGCTGCAGCTGTATATGGAGATGCAAGATAAATTTGACCTTCCTTGTGGCCCATTCGCCCCGGGAAGTTCCTGTTT
GTGGTTGAGACACATACCTGAGGTTCGTTCAACCGAGCATGAGTATCTCTAGGACCACCCATACAAGCACCACAACTAGGACTTGCTGGTGTATC
GCAGCCAGCATCCTCGAAAATCTGTGAACATGTTTTGCCACCAGATTCTGGAACTGGGATAGTATATAAATCCATCCAGACCTTCTGCGTAGCAG
GGACGAGAAATGTTGGAACTTTGACCTTCTTTCCTGATGCTAGAAAAACTTTGGCAGCAGCCATGAAGTCTTCTGTTTTCCCACCGGTACAAGAT
CCAATATATACTCTGTCAATCTTAACATCTTCGCATTCTCTTGCCAAAGCACGATTGCCAGGAGAATGAGGCTTTGCTACTAAGGGCTCCAACTT
TGAGATGTCGAAATGATACTTAGCAAGAAACCTGGCTTGCTCATCACTGTAGACAGGTTCATAATGCACAGTAGTCTTGTCCTTAANGGTAGTCA
TATGTTGT
TCTTCTGGTGTACATTACAAGCAAAAGTTCAAGCTTTATCGCGTTTTAACATGAACAATAACGCGTTTACTGCAGAAAATCTCGAGGATCAGTAA
CATGGCCAGTTAATGCAGATGCTGCAGCTGTATATGGAGATGCAAGATAAATTTGACCTTCCTTGTGGCCCATTCGCCCCGGGAAGTTCCTGTTT
GTGGTTGAGACACATACCTGAGGTTCGTTCAACCGAGCATGAGTATCTCTAGGACCACCCATACAAGCACCACAACTAGGACTTGCTGGTGTATC
GCAGCCAGCATCCTCGAAAATCTGTGAACATGTTTTGCCACCAGATTCTGGAACTGGGATAGTATATAAATCCATCCAGACCTTCTGCGTAGCAG
GGACGAGAAATGTTGGAACTTTGACCTTCTTTCCTGATGCTAGAAAAACTTTGGCAGCAGCCATGAAGTCTTCTGTTTTCCCACCGGTACAAGAT
CCAATATATACTCTGTCAATCTTAACATCTTCGCATTCTCTTGCCAAAGCACGATTGCCAGGAGAATGAGGCTTTGCTACTAAGGGCTCCAACTT
TGAGATGTCGAAATGATACTTAGCAAGAAACCTGGCTTGCTCATCACTGTAGACAGGTTCATAATGCACAGTAGTCTTGTCCTTAANGGTAGTCA
TATGTTGT
Unigenes |
Current Unigene builds | |||||
[SGN-E379628] | SGN-U576272 | Tomato 200607 | Build 2 | 9 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T214 [Download] [View] | Facility Assigned ID: 227_F05_TUS01F5.Td_045.ab1 |
Submitter: Koni | Sequencing Facility: Avesthagen |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.985 | Expected Error Rate: 0.0026 | Quality Trim Threshold: 20.5 |