EST details — SGN-E379892
| Search information |
| Request: 379892 | Match: SGN-E379892 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C168591 | Clone name: TUS-3-I5 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C5825 [cLEC-33-D4] | Trace: SGN-T30148 | EST: SGN-E206876 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C168591 [TUS-3-I5] | Trace: SGN-T565 | EST: SGN-E379033 | Direction: 5' | Facility: Avesthagen |
| Sequence |
| Sequence Id: SGN-E379892 | Length: 740 bp (783 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E379892 [] (trimmed)
GAGTGACTAAAGTATCAACCAGCGGAGAACATATGTCCAGTATTCCTACAAAACTCAATGCTACAAAATCACACCACTTGCAGAACAGCAGACAT
GCCCACTCCGTTAATCGCCCCTTTTTAAGGAAACACTGACTGAACCTACAGATGGAACTGTCTTGAATGAGCCTAGTGACGTGGTGTAAGCACAG
CACCAAAACTAGGATTTTCACACCGGCCCAACCAATTGCTTTTAGGCTGACGGTTTTCCTTCAGTATTCGTACCCCACTCTTCTTCTGCCTCAGT
TTCATTAATGAGTACCGCACTGTCAGTAGAATCAGCATCCACAACTACAGGCTCTTCTTGTCCCTCATTTTGTTCATCATCTTGCCCCAGTTCTT
GCACCTCATCACCACTCTGTTCTGCAACGTCGTGGTCTATATCTCCATTTTCAAGAGATTCTTCATCCATTTTCATGTTGCTGAAAGCTTCTACA
AGGTTGTTAGTTGATCTATCAGCATGATTTACATATTCTGTTGCTGGTGGGTAGCCACCACCCCTTTCTTCTGCAACTTTAGATTCAACAGCACA
TGCAACTTGCCAGTGCTCAAACATATTAGGATATTCTTCAGGATCAGCCAAAGCTTCTGCTGCTTTCTGGTTAACCTTACTGAGGTCCTTCTTCC
AAATTGCAACTATTTCAGAAACCTTACTTGGCAGATAAGATCTAGCCATAAAAGCAGCCTCAGGTACCCGATTGC
GCCCACTCCGTTAATCGCCCCTTTTTAAGGAAACACTGACTGAACCTACAGATGGAACTGTCTTGAATGAGCCTAGTGACGTGGTGTAAGCACAG
CACCAAAACTAGGATTTTCACACCGGCCCAACCAATTGCTTTTAGGCTGACGGTTTTCCTTCAGTATTCGTACCCCACTCTTCTTCTGCCTCAGT
TTCATTAATGAGTACCGCACTGTCAGTAGAATCAGCATCCACAACTACAGGCTCTTCTTGTCCCTCATTTTGTTCATCATCTTGCCCCAGTTCTT
GCACCTCATCACCACTCTGTTCTGCAACGTCGTGGTCTATATCTCCATTTTCAAGAGATTCTTCATCCATTTTCATGTTGCTGAAAGCTTCTACA
AGGTTGTTAGTTGATCTATCAGCATGATTTACATATTCTGTTGCTGGTGGGTAGCCACCACCCCTTTCTTCTGCAACTTTAGATTCAACAGCACA
TGCAACTTGCCAGTGCTCAAACATATTAGGATATTCTTCAGGATCAGCCAAAGCTTCTGCTGCTTTCTGGTTAACCTTACTGAGGTCCTTCTTCC
AAATTGCAACTATTTCAGAAACCTTACTTGGCAGATAAGATCTAGCCATAAAAGCAGCCTCAGGTACCCGATTGC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E379892] | SGN-U585843 | Tomato 200607 | Build 2 | 8 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T951 [Download] [View] | Facility Assigned ID: 240_A05_TUS03I5.Td_034.ab1 |
| Submitter: Koni | Sequencing Facility: Avesthagen |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.967 | Expected Error Rate: 0.0016 | Quality Trim Threshold: 20.5 |
Working
