EST details — SGN-E380006
| Search information |
| Request: 380006 | Match: SGN-E380006 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C168453 | Clone name: TUS-3-C11 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C168453 [TUS-3-C11] | Trace: SGN-T816 | EST: SGN-E379813 | Direction: 3' | Facility: Avesthagen |
| Sequence |
| Sequence Id: SGN-E380006 | Length: 738 bp (826 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E380006 [] (trimmed)
TCGCACGAGCTTTTCATTACTCTATTTCTTTCCTTTCTTGCATTATTGTTTTAGCAATTTTGCCTATTAATGCCCAAATTGTGACATCTCCATGT
ACAGCAACAATGCTGACTAGTTTTACTCCTTGCTTGAATTTCTTGTCCAACGGCAACGGAACGGCTGCACCATCTCCTGGATGCTGCAATGCACT
GAGAACAATGATGGGCAATGGCTCTGCTTGTCTCTGTGTTATTGCAACTGGTGGCATTCCCTTTCAGATTCCTATTAATCCTAATACAACCCTGT
CTCTTCCTCGAGCTTGTAACATGGCTCGCGTTCCCCTCCAATGCCAAGCCTCCTCTGTACCTGCAGCAGCTCCAGGTCCTGTTGGAACAGAGGCT
CCAAGTGCTTCACCAACACCATCTCCTAGTCCTTCTCCTAGTCCTAAAGGTACAACACCTTTCAACCCAATGTCACCAACTTTGGCACCACAAGC
TGATGTAATTCCTACTGTAACTCCACCATCTCCATCCGCGACGAATTCTGGCCGCCGTCAAAACCCAAATACTCCATCAGCTGCCCCTTCTGTTG
GCTATGGTCTTTCACCATTGGCCTTCAGTGCTGCAGTTGGTGCAATTGTTGTATTAGTTTGAAGTTAGACAGTACTAANATTAGTAAATTTGTGT
GAGATTTGTACTATTTTGTTATACAACTATTCTTTGATGTAATACAGAATCATGCATTTTTTTTTAATGTAAA
ACAGCAACAATGCTGACTAGTTTTACTCCTTGCTTGAATTTCTTGTCCAACGGCAACGGAACGGCTGCACCATCTCCTGGATGCTGCAATGCACT
GAGAACAATGATGGGCAATGGCTCTGCTTGTCTCTGTGTTATTGCAACTGGTGGCATTCCCTTTCAGATTCCTATTAATCCTAATACAACCCTGT
CTCTTCCTCGAGCTTGTAACATGGCTCGCGTTCCCCTCCAATGCCAAGCCTCCTCTGTACCTGCAGCAGCTCCAGGTCCTGTTGGAACAGAGGCT
CCAAGTGCTTCACCAACACCATCTCCTAGTCCTTCTCCTAGTCCTAAAGGTACAACACCTTTCAACCCAATGTCACCAACTTTGGCACCACAAGC
TGATGTAATTCCTACTGTAACTCCACCATCTCCATCCGCGACGAATTCTGGCCGCCGTCAAAACCCAAATACTCCATCAGCTGCCCCTTCTGTTG
GCTATGGTCTTTCACCATTGGCCTTCAGTGCTGCAGTTGGTGCAATTGTTGTATTAGTTTGAAGTTAGACAGTACTAANATTAGTAAATTTGTGT
GAGATTTGTACTATTTTGTTATACAACTATTCTTTGATGTAATACAGAATCATGCATTTTTTTTTAATGTAAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E380006] | SGN-U566753 | Tomato 200607 | Build 2 | 3 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T272 [Download] [View] | Facility Assigned ID: 228_C11_TUS03C11.T3_084.ab1 |
| Submitter: Koni | Sequencing Facility: Avesthagen |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.957 | Expected Error Rate: 0.0053 | Quality Trim Threshold: 14.5 |
Working
