EST details — SGN-E389477
Search information |
Request: 389477 | Match: SGN-E389477 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C168839 | Clone name: TUS-4-C13 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C168839 [TUS-4-C13] | Trace: SGN-T191310 | EST: SGN-E389984 | Direction: 5' | Facility: Avesthagen |
Sequence |
Sequence Id: SGN-E389477 | Length: 453 bp (793 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E389477 [] (trimmed)
AAGAGTAATTATGTAACAAGACGGTTAATTAGTAATCTGGTAACCAAATTTATATCTCTTAATCAAATTTTCTTGTAAAAGTAAGTAACTTATAT
ATTTATTTTCTATAAGTAATAAATCTATAATAATGACATACAAAAAGATAGCCATATAGATCCAAAGTTTGATTTGGACTTTTGGTGAAAAGGCC
CAATTAAAATGTAAAAAGGGCCCTAGTATGGCCCAACATGTTAGATTCACATAATTGAGCATCCAGATGCATTCTTTTCACTAAAGTAATCACAT
TTGTTCACATAACATCCCTTTGGGAGTCCATAGGGTATGGGCCCGGGCCCGGGCCCATATCCGTATGAATATGTGTCGTACCATGGTGGTGGTGG
AGGTGGTTGTACTGGTCTTCCGTACCAATTATCATGATAACAAGGGCCTCCAGTATAGCCTTCGTAACATTGC
ATTTATTTTCTATAAGTAATAAATCTATAATAATGACATACAAAAAGATAGCCATATAGATCCAAAGTTTGATTTGGACTTTTGGTGAAAAGGCC
CAATTAAAATGTAAAAAGGGCCCTAGTATGGCCCAACATGTTAGATTCACATAATTGAGCATCCAGATGCATTCTTTTCACTAAAGTAATCACAT
TTGTTCACATAACATCCCTTTGGGAGTCCATAGGGTATGGGCCCGGGCCCGGGCCCATATCCGTATGAATATGTGTCGTACCATGGTGGTGGTGG
AGGTGGTTGTACTGGTCTTCCGTACCAATTATCATGATAACAAGGGCCTCCAGTATAGCCTTCGTAACATTGC
Unigenes |
Current Unigene builds | |||||
[SGN-E389477] | SGN-U578859 | Tomato 200607 | Build 2 | 25 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T190803 [Download] [View] | Facility Assigned ID: TUS04-C13.Td |
Submitter: Koni | Sequencing Facility: Avesthagen |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.954 | Expected Error Rate: 0.0117 | Quality Trim Threshold: 14.5 |