EST details — SGN-E389656

Search information 
Request: 389656Match: SGN-E389656
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C169085Clone name: TUS-4-M19
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C22702 [cLED-3-B14] Trace: SGN-T49158 EST: SGN-E228510 Direction: 5' Facility: TIGR
Clone: SGN-C169085 [TUS-4-M19] Trace: SGN-T191240 EST: SGN-E389914 Direction: 5' Facility: Avesthagen
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Sequence 
Sequence Id: SGN-E389656Length: 620 bp (799 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E389656 [] (trimmed) TTATTAAAACAGTTTAATCGTGATTAGTGAGATGTCTCCTTGATTTCCACTAAAGCTTCTACTATTAGCTAAGCTGGTGACCACAACACCGCAGT
CGATATGATTTTTTTTTTTCATATAAATTCATTGGGAATCTTTACCCAGAAATATCAAACCTAAGGAAAATGAAACTATAATATCCTCAAGCAGA
CTGTAGAGATGAAGTGAATTAATTCCCTCCGCCATCTCCATAAAATTGCACAAGGCTAATCGGTGTTACATTGATTCTTATCTCAAATAATTTGA
TTGAGAAAATCTTTTTCCAAGCTGTTTGATTCTTAAATAAAGGATTCAAGAGTCATTAGTTGCAGAAGAATTCTCCTTAGACACCTTAGTACCAC
CATCGACTGCATCAGTAAGCATACCACTTCCCAAATTCACAACATCGGACACATTACGAACCTCATGGGCAGGTGGAGCATAAGAGGTCAACGGA
CTCTCCATTTGAGCTGTAGCACCTCCAACTGGAGGCTCATTTCTGATAGAATTCCCACCTAAGATATCTGCTTGCTGGGAAGTCGCTCACATTGG
TTTCTGAAGGTCTTGTAGCTTCTCTAACAGAATTATGGTCGCCATTCTGC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E389656] SGN-U580268 Tomato 200607 Build 2 19 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T190982 [Download] [View] Facility Assigned ID: TUS04-M19.Td
Submitter: Koni Sequencing Facility: Avesthagen
Funding Organization: Italian Ministry of Agriculture and Forestry (MiPAF)
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.973 Expected Error Rate: 0.0120 Quality Trim Threshold: 14.5