EST details — SGN-E390221

Search information 
Request: 390221Match: SGN-E390221
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182454Clone name: TUS-39-J20
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182454 is on microarray TOM1 spot ID 1-1-5.2.7.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C70952 [cLER-16-G7] Trace: SGN-T95627 EST: SGN-E284354 Direction: 5' Facility: TIGR
Clone: SGN-C182454 [TUS-39-J20] Trace: SGN-T197574 EST: SGN-E396248 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E390221Length: 670 bp (872 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E390221 [] (trimmed) CAGCATTTCAAATATTCTTTACTCCTAACCAAAAATTTAATTCCCCAGCAAACAAACAATCAAAATGAAGCAAAAGGTTGTTATTAAACTATCTT
TAAATGGAAACGGTCAGAAAGATCGAACCAAGGCCTTCAAAATTGCTGTTTCTCAATCAGGCGTAGAATCAGCAGCTATAACAGGAGACGGAAAG
AATCAACTCGAAGTTGTGGGAGAAGTAGACGCTGCGACTCTAACGAGCTTATTGAGGAAGAATTTGGGCCAGGCGGACTTGGTTAGCGTTGGCCC
GGCTGGTGGCGATAAAAAACCCGCAGCTCCAGCTCCAGCTCCGGCTGCAGCTGCAGCTGCGGTGGTACAATCGCAGCCCGACTCGTATTACTATG
TTTATCCGCCTTATCAATACCCTGTTTACCAAGTTACAGATTCTTATGGTCAATCGAATTGTTCCATTATGTGAAGAACAGGGAGATCCAAGATA
TAATAAAATTGTATTCACCGTCAAATATTTATTGATATGTTAGATAGATATTAGAGCTATTGGGTTTATGTAAATCTATGCGAGACAAAATAAAC
GATATTGGGAGGTCGAAATAAAGTATCATTTTAAGTTTTTTTGTTTTGTTCGTTCAGAGAGCTTAATGGACTATTCGTAAATGAAGAGTTTTGGT
TTTTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390221] SGN-U584433 Tomato 200607 Build 2 16 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T191547 [Download][View] Facility Assigned ID: FA0AAD27DE10RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.966 Expected Error Rate: 0.0095 Quality Trim Threshold: 14.5