EST details — SGN-E390307
Search information |
Request: 390307 | Match: SGN-E390307 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C173839 | Clone name: TUS-17-C21 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C173839 is on microarray TOM1 spot ID 1-1-4.3.17.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C5674 [cLEC-32-K12] | Trace: SGN-T29835 | EST: SGN-E207622 | Direction: 5' | Facility: TIGR |
Clone: SGN-C173839 [TUS-17-C21] | Trace: SGN-T191418 | EST: SGN-E390092 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E390307 | Length: 649 bp (871 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E390307 [] (trimmed)
CGATTGCCAATATAGCACAAGGCTATTCTAGGTCATTAAGTCATACAGCAGGAAAGTATACAGCTGAACAAATTCAAGAAGAGATCCACATACTA
CCAGACACCTCCTTTGATATCAGTAATCCACAGAACAGACGCTAATGTGCAAAGCTTCTATCCCCACCCCCTACCCGCACAGAAAGAAAGAAGAG
GGATACTAAAAGGAGTTCGGGGGTGTGGCAGGCAGTAGCCATCTTCAACTTCGAAAAGCTAAAAGCTGCTTGCCATGGGGCCTGCAGAAAGTTTA
GGCATAGTAGTTTAAGCTGGCTTTCTTCTTGGCTTGAACTTGAATGATACCTTCATTGAAGTCTTCATGAGTTACCTCAGTGGCATCGCGACGGA
GTGCTAGCATGCCTGCCTCAACACATACAGCTTTCAACTGTGCCCCATTAAAATCATCTGTCGACCGAGCCAATTCTTCGAAGTTAACATCTGGG
TTGACATTCATCTTTCTGGAATGGATCTGCAGGATCCGAGCCCTGGCTTCCTCTGTGGGGTGGGGGAATTCGATTTTACGATCCAAACGACCAAA
TCGCATCAAAGCAGGATCCCAAATATCAGCTCTGTTTGTTGCTGCTATCCCCTTAATCCGATCATCGCTTGCTAGAACC
CCAGACACCTCCTTTGATATCAGTAATCCACAGAACAGACGCTAATGTGCAAAGCTTCTATCCCCACCCCCTACCCGCACAGAAAGAAAGAAGAG
GGATACTAAAAGGAGTTCGGGGGTGTGGCAGGCAGTAGCCATCTTCAACTTCGAAAAGCTAAAAGCTGCTTGCCATGGGGCCTGCAGAAAGTTTA
GGCATAGTAGTTTAAGCTGGCTTTCTTCTTGGCTTGAACTTGAATGATACCTTCATTGAAGTCTTCATGAGTTACCTCAGTGGCATCGCGACGGA
GTGCTAGCATGCCTGCCTCAACACATACAGCTTTCAACTGTGCCCCATTAAAATCATCTGTCGACCGAGCCAATTCTTCGAAGTTAACATCTGGG
TTGACATTCATCTTTCTGGAATGGATCTGCAGGATCCGAGCCCTGGCTTCCTCTGTGGGGTGGGGGAATTCGATTTTACGATCCAAACGACCAAA
TCGCATCAAAGCAGGATCCCAAATATCAGCTCTGTTTGTTGCTGCTATCCCCTTAATCCGATCATCGCTTGCTAGAACC
Unigenes |
Current Unigene builds | |||||
[SGN-E390307] | SGN-U575333 | Tomato 200607 | Build 2 | 61 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T191633 [Download][View] | Facility Assigned ID: FA0AAD5AB11FM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.983 | Expected Error Rate: 0.0033 | Quality Trim Threshold: 14.5 |