EST details — SGN-E390428

Search information 
Request: 390428Match: SGN-E390428
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182306Clone name: TUS-39-D16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182306 is on microarray TOM1 spot ID 1-1-1.4.8.17 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C19642 [cLED-27-I12] Trace: SGN-T55581 EST: SGN-E241862 Direction: 5' Facility: TIGR
Clone: SGN-C182306 [TUS-39-D16] Trace: SGN-T197481 EST: SGN-E396155 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E390428Length: 774 bp (893 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E390428 [] (trimmed) AATAAAGTTTGGATACGCTATTTATTCATTCGAACTAATAAAACCACAAATGTTCTTCCAAACCAATCAACCCCTAAATTCACTTTACTTGATAC
TAACAAATGTGTATCAGTAGTATTACAAGTCAGAAACAAGCATGAAAACAAAAAACTATATTGAAAGTAAGATGCTATGAGATCAGAAACAAGAA
GGCGATCAAATCGCGCAGAGTAACCCATAGAAACAGCCAATTTGCAAGATTGTGAAAGTATCATCTCTATTTGTTACGTTTTTTAGCCTGCTTGC
CTTGACCCTTCTTAGGAGGTCCCTTTCCACGACGTCTAAGCATTTCAAGCTTGCTCAGGCGCTCTTGCTCTTGACGTGCCATCACAAGAGGATCA
TCTTTCATGATATCATGTGGGTACCATTGTGAAACCTTCTCACCGATGAGCTTCTTGCGTAAAACCTTGTGGGATGATCTCTGCCCGGTTGGATT
AAGCACATGACCAAATATCCTGGCCCTTGCTTCAGCCAACCCTTCAATGGCTGCAGCAGCTACCACATTCTTTAGTCTCCCAAAGTTCATTTCTT
GGTTACGAAAGCAGCTCAGTACACGGATTTCTCTGCACAAAGAATCACAGTCTCAAGACAGACACATTAAACTAAGTCGCTATTAGTATATCTCA
ACGGTGACTAAAAGTGTAAAGATTCTCTTACACTACCAGCATGAAGAAAACATCAATTTTGGAATTGTGACAGTTAAAAATCCACGCCAGCCCAT
AATCAACAAGGGGT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390428] SGN-U591532 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T191754 [Download][View] Facility Assigned ID: FA0AAD27DB08FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.966 Expected Error Rate: 0.0032 Quality Trim Threshold: 14.5