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EST details — SGN-E391440

Search information 
Request: 391440Match: SGN-E391440
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C186002Clone name: TUS-48-N16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C186002 is on microarray TOM1 spot ID 1-1-1.2.7.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C70046 [cLER-13-G23] Trace: SGN-T94724 EST: SGN-E284030 Direction: 5' Facility: TIGR
Clone: SGN-C186002 [TUS-48-N16] Trace: SGN-T192442 EST: SGN-E391116 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E391440Length: 677 bp (880 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E391440 [] (trimmed) GAAAAAAAAATCCATTCTATGAAGTCACAACTACTTTACAGGGCCATCAAACAATCAAAATTCAAAAAATATATTATGATATTCATTTTCCGGGG
ACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGC
CTGAACAAAGAATCCGAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCGGGGTCTTCAGCAA
GGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATC
AAGACAACTTGGCAAGCCCAGATGGCCAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCTCCCTCGCTGAAGATCTG
GGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACACCGTTACGGGCCAATAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCC
ATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTTTCAGGGTCTGCTGAGAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAAT
TCACCAGTCAAG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E391440] SGN-U578505 Tomato 200607 Build 2 231 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T192766 [Download][View] Facility Assigned ID: FA0AAD36DG08FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.975 Expected Error Rate: 0.0021 Quality Trim Threshold: 12.5