Notice: The SGN server will be upgraded later today. SGN may be intermittently unavailable during the upgrade. We apologize for any inconvenience.

EST details — SGN-E391699

Search information 
Request: 391699Match: SGN-E391699
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C177802Clone name: TUS-27-H24
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C177802 is on microarray TOM1 spot ID 1-1-1.4.6.16 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C62213 [cLEM-1-N16] Trace: SGN-T83773 EST: SGN-E270400 Direction: 5' Facility: TIGR
Clone: SGN-C177802 [TUS-27-H24] Trace: SGN-T193273 EST: SGN-E391947 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E391699Length: 603 bp (801 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E391699 [] (trimmed) GCTCTCTTCTTCTTCATTTTCTCTCTCTATACATACATATATTATATATATATATATATAAACGTATTGAGAGACCACCAGTAATGGGGGCGTAC
AGATCGGACGACGACTACGATTATTTGTTCAAGGTGGTGTTGATCGGCGATTCCGGCGTCGGGAAATCTAATCTTCTATCCAGATTTACACGTAG
CGAGTTCAGTTTGGAGTCAAAGTCAACGATCGGCGTTGAATTCGCTACTCGTAGCATTCGTGTTGATGATAAGGTTGTCAAGGCTCAGATTTGGG
ATACTGCCGGTCAGGAACGATATCGCGCAATCACGAGTGCCTACTATCGAGGAGCTGTTGGAGCATTGCTTGTCTATGATGTCACCCGTCATGTA
ACTTTTGAGAATGTAGAGAGATGGTTAAAAGAGCTCCGAGATCACACTGACTCTAGCATTGTCATAATGCTGGTGGGTAACAAGGCAGATTTGCG
TCATCTGCGTGCTGTTTCTACTGAGGATGCCCAGGCATTTGCAGAGAAGGAAAGTACATTTTTCATGGAAACATCCGCTTTGGAGTCCATGAACG
TTTGAAGTGCCTTCACAGAATTGCTCACTCAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E391699] SGN-U577600 Tomato 200607 Build 2 25 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T193025 [Download][View] Facility Assigned ID: FA0AAD15DD12RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.981 Expected Error Rate: 0.0069 Quality Trim Threshold: 14.5