EST details — SGN-E392121

Search information 
Request: 392121Match: SGN-E392121
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C176638Clone name: TUS-24-H12
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C176638 is on microarray TOM1 spot ID 1-1-5.4.9.15 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C27166 [cLEF-42-L7] Trace: SGN-T60637 EST: SGN-E247593 Direction: 5' Facility: TIGR
Clone: SGN-C176638 [TUS-24-H12] Trace: SGN-T193448 EST: SGN-E392122 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E392121Length: 694 bp (878 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E392121 [] (trimmed) AAAAGCAGGCAATCAATAGATTTCACTATGCTAAAATTTTAAATATTATTCTTCTATAAATAAATACAAATACTCTTTTGTCATGGAGAAATAAT
GAAAGTTTAATTATTTTTTTGAGAAGGAAAAAAGCAGAAAGAAATACAATTTGATGTAAGCATCAAATGCCAGAAAGTTTTTGTTGTATACATTT
AACTGTTTAGTAGAGACAACCAGAAACCTGAAATGAATAAAACAAAACTTCGGCCAAACTACATTCTAACCTGGTGACAAATTCTGGCAATTTTT
CTCTAGGATTTTATCATTTTTCGATTGCATGATTGATACAAGTAAACCTATTATTACAATAACAAACCCAAAGTTTTGAGGAGGAAGAAAGAATT
TATCTTTCTCCTTTTTCTTCGTTGAAGAGCTCGTAATGTGTTTCCAACATCTCTGATGTGCTTGGCTGGAGGGCTAACACCCTTCCTGACAAATA
AAGCAATAAAGAAGCCCTCCTGATCCTCTATGAGATCGGTTCTAAGCACACGTTGAGATCCATCAAAAATTGGATGACCTCGGCGAGCCCACTGG
GGAAAGATTGTTGTCAGTTCAAAACCATAAGACGAAGCGAGAGGCAGAACAGATTTGATAACATCTTCATTCTCAACTTGGTTAACAGAACATGT
ACTGTAAACAATTCTCTCAACAGCTGGAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E392121] SGN-U573857 Tomato 200607 Build 2 17 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T193447 [Download][View] Facility Assigned ID: FA0AAD12DD06FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.945 Expected Error Rate: 0.0023 Quality Trim Threshold: 14.5