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EST details — SGN-E392887

Search information 
Request: 392887Match: SGN-E392887
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C181394Clone name: TUS-36-N16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C181394 is on microarray TOM1 spot ID 1-1-1.2.14.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C19898 [cLED-28-H6] Trace: SGN-T56014 EST: SGN-E241536 Direction: 5' Facility: TIGR
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E392887Length: 641 bp (827 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E392887 [] (trimmed) GAGTTTCCGCAGGATCCCATTTGGCGGAAAGCATATCATGAATTTTTTCATACTCAAGATTCAAACACAAACTCGAGATCTCTGGTTAAAACAGA
AACAATTCCGTCCACTGCAATGCTGAATTCAACAGTGGAGATTTTTGAGCAACGTTTTATGACTGGTGCGGGCAAAAACCTTCCTGAACATGCAA
TGATTTGCATGATAAATCGTGAAGAGGTAAAGCTCTAACTTGGAGTACCGACTTTCCTCACTATTTAATGTTGTTTTGTCCGATAGTTGAGAACG
ATTTGGAAAGTCACCCGATAATTTATTAGTTAATATATTTTCAAGAAATAATATAACCTTAAACACATAATTTAATATTTCCCATTAGTTTACTA
AGTTAAAACATTCTTTAAGTATGCAGTCTTAAATTTTACTTCCAATTCATTTTCTTATTTCTTCCTCTCAGTCAGTCATGAGCGAGCTGTGCTTA
GACGCCCCTGCCGTGGATGATCCGGACAAGTTATTCGCTAATACATTGTTTGAGGTTGTATTCAATGAGAGCCGGAATTTGCCATTCATTTTGTT
CGTGAAAGATGCTGACAAAGTAATGGCAGGAAACGCAGAATTATATTCAACATTTAAAACTCGGCTTGAGA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E392887] SGN-U581383 Tomato 200607 Build 2 11 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T194213 [Download][View] Facility Assigned ID: FA0AAD24DG08RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.960 Expected Error Rate: 0.0024 Quality Trim Threshold: 14.5