EST details — SGN-E393639
| Search information |
| Request: 393639 | Match: SGN-E393639 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183679 | Clone name: TUS-42-M21 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183679 is on microarray TOM1 spot ID 1-1-4.1.1.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C2495 [cLEC-16-D24] | Trace: SGN-T27088 | EST: SGN-E205199 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183679 [TUS-42-M21] | Trace: SGN-T194963 | EST: SGN-E393637 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183679 [TUS-42-M21] | Trace: SGN-T194964 | EST: SGN-E393638 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183679 [TUS-42-M21] | Trace: SGN-T199572 | EST: SGN-E398246 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183679 [TUS-42-M21] | Trace: SGN-T199572 | EST: SGN-E399194 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393639 | Length: 626 bp (837 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E393639 [] (trimmed)
GGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATT
TAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGAT
CAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTA
CTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATC
GGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTT
ATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAAAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGAAGTGGTA
GCTCATGGTCCATCATTAGACCCATTTGTAAAGCCAGCTTCTCCATTGATGGAAAA
TAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGAT
CAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTA
CTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATC
GGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTT
ATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAAAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGAAGTGGTA
GCTCATGGTCCATCATTAGACCCATTTGTAAAGCCAGCTTCTCCATTGATGGAAAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393639] | SGN-U580965 | Tomato 200607 | Build 2 | 25 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T194965 [Download][View] | Facility Assigned ID: FA0AAD30AG11RM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.958 | Expected Error Rate: 0.0109 | Quality Trim Threshold: 14.5 |
Working
