EST details — SGN-E393676

Search information 
Request: 393676Match: SGN-E393676
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183372Clone name: TUS-42-A2
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183372 is on microarray TOM1 spot ID 1-1-7.1.2.19 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C4127 [cLEC-23-K12] Trace: SGN-T28429 EST: SGN-E206470 Direction: 5' Facility: TIGR
Clone: SGN-C183372 [TUS-42-A2] Trace: SGN-T1757 EST: SGN-E378616 Direction: 5' Facility: Giov. Lab
Clone: SGN-C183372 [TUS-42-A2] Trace: SGN-T195977 EST: SGN-E394651 Direction: 3' Facility: INRA
Clone: SGN-C183372 [TUS-42-A2] Trace: SGN-T195999 EST: SGN-E394673 Direction: 5' Facility: INRA
Clone: SGN-C183372 [TUS-42-A2] Trace: SGN-T195999 EST: SGN-E399211 Direction: 5' Facility: INRA
Clone: SGN-C183372 [TUS-42-A2] Trace: SGN-T200265 EST: SGN-E399210 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E393676Length: 270 bp (866 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E393676 [] (trimmed) GCTTTGTATCAAACAACAAGATCTGCAAGTAGCTTAAATTTGCTTCTAACAGATCCATGGCTGAAAATCAAAAAACAGTTTTCAAGTCAGTACAA
GAACTAGCAAATGAAAATCAAGTTCCAGAAAAGTATATTCATACACAAGGGTCAATCAATAGCTCTTGTCCCATGCTGAATGTGCCAGTAGTTGA
CCTTACACTTCTCACATCCACTGCCAGAAAACTTGAGCTCAACAAACTTCAATCAGGCCTCAAGTTTTGTGGCTGCATCC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393676] SGN-U563058 Tomato 200607 Build 2 26 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195002 [Download][View] Facility Assigned ID: FA0AAD30BA01RM2
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.929 Expected Error Rate: 0.0133 Quality Trim Threshold: 14.5